NNAATACTCNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAAATTCTGATTTTCTCCCACTTTTATCATGAAGGGGTAT
TGAACTTTGTCAAACCTTTTTCAGCATCTAATGAGATGATCTATGTTTTT
TGGCTTTGAGNCCGGTTAAAAACGGGATAACTTGGNGGGATTTTGGGAAT
TTGAACCAACTTTGGTCCCCGGGAAGAACCCCATGGCCCCGGGGGGGGGA
ACTTTTAAGGGTCCTGGACCCCCCTGAAAAAAATGGTGGGGAATTTTTTC
CCCCAATTTTCAAAAAAAACCCCGCTTTATTTCCTTTTTTTGGAACCCCC
GGGGGGGCTCAAAAAAAAAAAGTGGGGGTCCCCAAAAAAAATTTTGGAAA
AATTTTTTCTTTTTTTTTGGTGGGGCTTTTAAAAAAAAAAGAAAAAAAAC
TCTTTTTGGGGAAAAAAACAAACCACAACCCCCCCCCCGCGCGGGGTTTT
TTTTTTGAGGAAAAAAAAAAAAAACCCGCCTCTTTTCTCCCCGGGGGGGG
GGAAGGGATTAATAAATGGCCCGCCCTCCCTCTTTTTCGCGGCCGCTCCC
TTCCCCAAAAAAAAAAAACACCCCCCCCCCCCCTCTCCTCTGGGTGGGGC
CCATTCTCCGACCACCAAGAGGAGGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCACAGCAAAGCCTCTTGAACAATTGCATGTAAA
ATCGGAGGGGAAAAAATCCTGCAAATTCTCTACTCTTAATGTGGTGTATT
GTTCTTTGGTAGTAATAGGAGAGAAATATTCACAGAATTCACTAAGTGGG
AGGAATGTGAAGTGTCTTAGAGTTTGCCATATTATTACTTTCAAGGTAAC
ATCCTGGATTAAGGAAAGATTCCTAAAACTTCATATAGATAAAAGTTATT
GTGAGGTAGAGGCTATAAAATACACGTGACTGATTGCAAATAAATAATAC
AAAAACATGTTGAAGGAAATCCTTGAAAACCTATATACTCCACTCCAAAA
ATGTAGAATATTTATATCTTTTCAAAACTACAGAATAGAACTGTGATTTC
ACAGCAAAATTGTTATCTCTAAGTAACAAACTACAAAAATATTTTTTTCT
AAAATCAAAATTAAAGTGCTGAAAAGCTAAATTTCAATTACCTTGGATAG
GGCTATATTATATACATAAATACACAGACGCACATATGCATACATTTCTG
CAAGTTACATTACATGGTTTGTTTAATGAGAAAGGGATGTAAAAGTTGAC
ATTGATCTGTAGCTACTAAGACTGTGCATGTTGCAAAATAAGCACATTAG
CGCAGCGTTTTTATATCTTTGCTTCTCCATCTAAGAAAT

Query= MSMg01no422_d20.g1 MSMg01no422_d20.g1 CHROMAT_FILE:
MSMg01no422_d20.g1 PHD_FILE: MSMg01no422_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:39 2005
         (548 letters)



>mm_chr13_80115618_80116565
          Length = 948

 Score = 1052 bits (544), Expect = 0.0
 Identities = 547/548 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagcaaagcctcttgaacaattgcatgtaaaatcggaggggaaaaaatcctgcaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagcaaagcctcttgaacaattgcatgtaaaatcggaggggaaaaaatcctgcaaatt 260

                                                                       
Query: 61  ctctactcttaatgtggtgtattgttctttggtagtaataggagagaaatattcacagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctactcttaatgtggtgtattgttctttggtagtaataggagagaaatattcacagaa 320

                                                                       
Query: 121 ttcactaagtgggaggaatgtgaagtgtcttagagtttgccatattattactttcaaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcactaagtgggaggaatgtgaagtgtcttagagtttgccatattattactttcaaggt 380

                                                                       
Query: 181 aacatcctggattaaggaaagattcctaaaacttcatatagataaaagttattgtgaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacatcctggattaaggaaagattcctaaaacttcatatagataaaagttattgtgaggt 440

                                                                       
Query: 241 agaggctataaaatacacgtgactgattgcaaataaataatacaaaaacatgttgaagga 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 agaggctataaaatacacgtgactgattgcaaataaataatataaaaacatgttgaagga 500

                                                                       
Query: 301 aatccttgaaaacctatatactccactccaaaaatgtagaatatttatatcttttcaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatccttgaaaacctatatactccactccaaaaatgtagaatatttatatcttttcaaaa 560

                                                                       
Query: 361 ctacagaatagaactgtgatttcacagcaaaattgttatctctaagtaacaaactacaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctacagaatagaactgtgatttcacagcaaaattgttatctctaagtaacaaactacaaa 620

                                                                       
Query: 421 aatatttttttctaaaatcaaaattaaagtgctgaaaagctaaatttcaattaccttgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatatttttttctaaaatcaaaattaaagtgctgaaaagctaaatttcaattaccttgga 680

                                                                       
Query: 481 tagggctatattatatacataaatacacagacgcacatatgcatacatttctgcaagtta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagggctatattatatacataaatacacagacgcacatatgcatacatttctgcaagtta 740

                   
Query: 541 cattacat 548
           ||||||||
Sbjct: 741 cattacat 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)