Query= MSMg01no423_a01.b1 MSMg01no423_a01.b1 CHROMAT_FILE:
MSMg01no423_a01.b1 PHD_FILE: MSMg01no423_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:34 2005
(515 letters)
>mm_chr13_78996209_78997122
Length = 914
Score = 936 bits (484), Expect = 0.0
Identities = 504/514 (98%), Gaps = 8/514 (1%)
Strand = Plus / Minus
Query: 5 gaattcaatgtg---tttcaggggaggtgctcatgaaagcaacccttggctaagaagcta 61
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 658 gaattcaatgtggga----aggggaggtgctcatgaaagcaaccctttgctaagaagcta 603
Query: 62 tagttactgagtgctagtagagggagatccaattttcttcagggatgtagcatccatatt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tagttactgagtgctagtagagggagatccaattttcttcagggatgtagcatccatatt 543
Query: 122 ctagaaaatgttcctacagccatgataatataggcattatatgtagacaccatggnggga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 542 ctagaaaatgttcctacagccatgataatataggcattatatgtagacaccatgg-ggga 484
Query: 182 aaggaagagagagagacacacagagacagagacagaacatatgaatttggaaagaaaaag 241
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 483 aaggaagagagagagacacacagagacagagacagaacatatgaatttgggaagaaaaag 424
Query: 242 tggttgggatataggatatagcaaaggaagtaggaggaaggactagagattatatttgat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tggttgggatataggatatagcaaaggaagtaggaggaaggactagagattatatttgat 364
Query: 302 aaaaacacattcatttataaaattgtctaacaacaagtctagaaaggaaggaaaaataaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aaaaacacattcatttataaaattgtctaacaacaagtctagaaaggaaggaaaaataaa 304
Query: 362 aatatttttaaaatcatattaaaagctgcatgtgaaaatgctaaattaaatgtttctcaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aatatttttaaaatcatattaaaagctgcatgtgaaaatgctaaattaaatgtttctcaa 244
Query: 422 gaaaaaaacaccaataatttttattgttttgctatgatcatatcagtgtcaagatcagcc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gaaaaaaacaccaataatttttattgttttgctatgatcatatcagtgtcaagatcagcc 184
Query: 482 atcatcaaagaacattcctcctatagaagatcaa 515
||||||||||||||||||||||||||||||||||
Sbjct: 183 atcatcaaagaacattcctcctatagaagatcaa 150
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 914
Length adjustment: 10
Effective length of query: 505
Effective length of database: 904
Effective search space: 456520
Effective search space used: 456520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no423_a01.g1 MSMg01no423_a01.g1 CHROMAT_FILE:
MSMg01no423_a01.g1 PHD_FILE: MSMg01no423_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:35 2005
(581 letters)
>mm_chr13_78819056_78820037
Length = 982
Score = 1069 bits (553), Expect = 0.0
Identities = 578/593 (97%), Gaps = 12/593 (2%)
Strand = Plus / Plus
Query: 1 ttgacttctttattttaatccacatatttaaattaaaaattcctcaattcttagttataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttgacttctttattttaatccacatatttaaattaaaaattcctcaattcttagttataa 249
Query: 61 tatatgctaggagttataataggtgctataaacatgaaagcgagtagaatatatttctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tatatgctaggagttataataggtgctataaacatgaaagcgagtagaatatatttctca 309
Query: 121 gaactaatacttgtggggggatcaatagtacagccacggaaaaatgaaaacaatctaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gaactaatacttgtggggggatcaatagtacagccacggaaaaatgaaaacaatctaaca 369
Query: 181 attgtgctggaaacagaagaaagagagaagtttcactttctgggatagcaagaaaacttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 attgtgctggaaacagaagaaagagagaagtttcactttctgggatagcaagaaaacttc 429
Query: 241 cggaggaagtaaaaaaaaaaaaaaa-----------gcctgagtttaggcagcaaaggca 289
| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 430 cagaggaagtaaaaaaaaaaaaaaaaaaaaaaaaaagcctgagtttaggcagcaaaggca 489
Query: 290 gaggctgtgtttgggggtctggatccggtgtaggaggacatgagtggagttgagactttc 349
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 490 gaggctgtgcttgggggtctggatccagtgtaggaggacatgagtggagttgagactttc 549
Query: 350 gatgttctgagttgcatttgtgatctctcctgct-gtctctatgtgatccatcccattac 408
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 550 gatgttctgagttgcatttgtgatctctcctgcttgtctctatgtgatccatcccattac 609
Query: 409 tataagtaaggaacccagtgtactgaggtcgcggagtgcatcagcaacattaagttgtaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tataagtaaggaacccagtgtactgaggtcgcggagtgcatcagcaacattaagttgtaa 669
Query: 469 gtcttggaggcatgcatccttcctcatttctagttaccctatcatattgcagctccctat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gtcttggaggcatgcatccttcctcatttctagttaccctatcatattgcagctccctat 729
Query: 529 ctatttttgatcacctttattatcggcttttacttaatttgacatgggaaagt 581
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ctatttttgatcacctttattatcggcttttacttaatttgacatgggaaagt 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 982
Length adjustment: 10
Effective length of query: 571
Effective length of database: 972
Effective search space: 555012
Effective search space used: 555012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
