BAC Information

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BAC

Clone NameMSMg01-423E04
Chromosome13 (Build37)
Map Location 6,329,449 - 6,329,979
singlet/doubletsinglet
Overlap geneLOC100039395
Upstream gene1700016G22Rik, Klf6, LOC100039388
Downstream genePitrm1, Pfkp, LOC100039532, LOC667611
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423E04.T7 (MSMg01no423_e04.b1)MSMg01-423E04.TJ (MSMg01no423_e04.g1)
ACCAG517458AG517459
length793711
length of high quality
(start - end)
---530 (70 - 599)
definitionCHROMAT_FILE: MSMg01no423_e04.b1 PHD_FILE: MSMg01no423_e04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:54 2005CHROMAT_FILE: MSMg01no423_e04.g1 PHD_FILE: MSMg01no423_e04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCTAAGAGGATCCGCGGAATTCTCA
CATTTTTGCCCAGGACTTTGATTCAGTTCTTAGCACCCATGTTCACAGCT
CCCTGTAATCCTAGTTCCGGGGGGGGGGGCGGGGGGNGTAANNTNTTTTT
TTTTGTTTTCCTTAGTTTTTTTTATATTTCTTATTATGTTTTTATTCATT
ACTCTGAAATTTTTTATATTTCTCTCTATAAAGTGCGATGTTCTTTTTTT
TTGGATTCATCTCTCTTGTTCGTTTTTCTTTTTTATTTTTTTTTTAACTT
TTTATTAGTTTTTTTTTTTTTCTTCGCGCATTTTTTTTTTTATCCTTCTG
ATATTTTTTTTCTTCCCACCCTATTATTATTTATATTTTCATCTTTTCTT
TTTTTTTTTCTTTCCCTTAAATTATTTTAATTCTTATTCCTTTTTTATTC
TCCTTCGTTTTTCTATCTTTTTTACTTTTTTCTTATTTTTATTTATTTTT
CACTTATTTACTCCCTTTTCATTCATATAACTTTTTTTTTTTTTTTTCAG
CTTCTATTTTTCCTCCTTTTCTTTCCTTTTTTTTTTCTACTCTTTATATT
TTTCTTTTTTTTTCTCTCTATCCCCTCTTCTCTCCCACCCTTTTCCACTT
TTTTTTCTTTTTCCCTTTTTTCTTTTCCTTTCTCTTAATTTTTCCCCCTT
TTTTTTTTCTCCCCGCCTCTCCTTTTCTTTTCTTTTTTTTTTTATCCTTT
TTTATACCCATTATTTCTCTTTTTATCCCTTTTTTTTTCTTTT
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGCCCTTAATATTGACCTTCACCCTCAATAT
GCAAGTCCCCTATGCCAGAAGCACAGCCCATCACCTGCATTTAGTTCTGT
TGCTCATTTTCTTCAATTTTCACTCTATTTATAGTTGAAAACTCTCCATC
TCCCCCTGTTGAAATACATTAGTTGCTATGGAAACTGTGATGTCAGCAGC
ATGGATGCAGTCAGATGACATGTACAATTGCTGAGCACAGTTGGCATATC
CACAGGAGGAATTGTTGTCATGGCTGTGGAGGTCCTTGAAGGGCAGGATG
GAGATAGTCATTGAGGCGGCAGACAACATAACTGCCAGGAAGACACACCA
CACGGTAGGTGAGAAGTTCAGAATGAGGGGAGAGCTAAGAGAAGGCTACC
CACAGTGAGGCGAAGCTCCCCTAATGGTACCCATTCATAGTCCTAGTGGC
TATTTAATTCTCAGAACATGAACACTGAAGGTCTGGGAAATGTCTCAGTG
GATGGATCAAATGCCTGCCATGCTAGCATGAAAACCCAAGTTAGGACCTC
TGGAATCCACATGTAAGGCTAGGCCTGGAGGCATGTGCCTTTACTCTGGG
TACTGAAAGGGAGACCTGAAGATGCTACATCTGGTTTGCAGTTAGTCCAT
TAGGTTTGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_e04.g1 MSMg01no423_e04.g1 CHROMAT_FILE:
MSMg01no423_e04.g1 PHD_FILE: MSMg01no423_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:54 2005
         (530 letters)



>mm_chr13_6329249_6330179
          Length = 931

 Score =  965 bits (499), Expect = 0.0
 Identities = 523/531 (98%), Gaps = 1/531 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcccttaatattgaccttcaccctcaatatgcaagtcccctatgccagaagcacagccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 agcccttaatattgaccttcaccctcaatatgcaagtcccctatgccagaagcacagccc 672

                                                                       
Query: 61  atcacctgcatttagttctgttgctcattttcttcaattttcactctatttatagttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 atcacctgcatttagttctgttgctcattttcttcaattttcactctatttatagttgaa 612

                                                                       
Query: 121 aactctccatctccccctgttgaaatacattagttgctatggaaactgtgatgtcagcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aactctccatctccccctgttgaaatacattagttgctatggaaactgtgatgtcagcag 552

                                                                       
Query: 181 catggatgcagtcagatgacatgtacaattgctgagcacagttggcatatccacaggagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 catggatgcagtcagatgacatgtacaattgctgagcacagttggcatatccacaggagg 492

                                                                       
Query: 241 aattgttgtcatggctgtggaggtccttgaagggcaggatggagatagtcattgaggcgg 300
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aactggtgtcatggctgtggaggtccttgaagggcaggatggagatagtcattgaggcgg 432

                                                                       
Query: 301 cagacaacataactgccaggaagacacaccacacggtaggtgagaagttcagaatgaggg 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 431 cagacaacataactgccaggaagacacaccacactgtaggtgagaagttcagaatgaggg 372

                                                                       
Query: 361 gagagctaagagaaggctacccacagtgaggcgaagctcccctaatggtacccattcata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gagagctaagagaaggctacccacagtgaggcgaagctcccctaatggtacccattcata 312

                                                                       
Query: 421 gtcctagtggctatttaattctcagaacatgaacactgaaggtct-gggaaatgtctcag 479
           ||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 311 gtcctagtggctatttatttctcagaacatgaacactgaaggtctgggggaatgtctcag 252

                                                              
Query: 480 tggatggatcaaatgcctgccatgctagcatgaaaacccaagttaggacct 530
           ||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 251 tggatggatcaaatgcctgctgtgctagcatgaaaacccaagttaggacct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 931
Length adjustment: 10
Effective length of query: 520
Effective length of database: 921
Effective search space:   478920
Effective search space used:   478920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)