BAC Information

Click to search

BAC

Clone NameMSMg01-423H10
Chromosome13 (Build37)
Map Location 62,958,764 - 62,959,210
singlet/doubletsinglet
Overlap geneFbp2
Upstream geneEG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951
Downstream geneFbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423H10.T7 (MSMg01no423_h10.b1)MSMg01-423H10.TJ (MSMg01no423_h10.g1)
ACCAG517613AG517614
length756738
length of high quality
(start - end)
458 (31 - 488)474 (65 - 538)
definitionCHROMAT_FILE: MSMg01no423_h10.b1 PHD_FILE: MSMg01no423_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:09 2005CHROMAT_FILE: MSMg01no423_h10.g1 PHD_FILE: MSMg01no423_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTATACGACTCACTATTCCAAGAGGATCCGCGGAATTCTCATTAT
CTCATATTTGCAAAGTCTTAATGGGACTTTAAAATGTGTTTTGATGCCTT
TTTTTTTTTTTTTTTTTACCCTGTACAGGTGTGTTCAGTTGACATGACCT
CTGTCAGTACTGTGGGGTAGAAATCACCAGAACACAGGTTAAGGGGGCTT
GACTGTCATGAAAAGAACCTGGCTCAGTTTTCTTCATCTTCACGTGGTGT
TCAGGAATCTGGACAGGCTGGGCTGGGGCAGGCACAGCAGAGCACCTTTG
CTTGGTTCTCTTTTGCAGAACAGGGCCACATTCGTGCTGGAGTTGCTCGT
GGCCACAGCCAGGAGCACGGTTTTAAGGCATGATGAAAAGAAATCACTTC
CTTTGGACTTCCATTTTGATTCCAGTGAAGGGCCCCTCTGAAGTCGAAGG
AAGGGACATACATGTGTGTGTGTGTGGGGGGGAACCCTCGAAGAAGAGCC
AACAAAGTCCCCCTATTTACAATGTTTATTCTCAATCGTGTGGTGCCTTT
ATTCCCAAACTGTGACCGCATTAATTTCTTAATTGCATTCTTAAACCCCC
TCAGAACTTACCATGTCCTTGTTTAAGAAAGTAACATTGCTCCCCCTTTA
AAGATGAATGATTGGCGCCTTCCCCCCTTCCGCGCTTTGCTCCCCCCATG
TTTAACTCATTCCCTTTTTTCTAAATGACCATTTCCTCTTTTTTTTTATA
ATATAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCACAGATGGAGCCTTTATGTCAGAAAAATAAAAAGA
CCTTGCAAGCCAGTACGTGGGAAAGAGAGATTGAGAAAGAACTACCATCT
TCAATATCCTTTATTTACATATATATATATATATGCTCACAGCAGAAGTT
CTGGCCTAGATTAATTTTTTTCTTCTCAATAAAAACCTCCAGATTAAAGA
AGGGTTTTCCCATCTTTTTGTTTGTTTGATTGTTTTTGTTTTTTGTTTTT
GAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTA
GACCAGGCTGGCCTGGAACTCAGAAATCTGCCTGCCTCTGCCTCCTGAGT
GCTGGGATTAAAGGCGTGTGAAACCAATCCTGGCTCTCTATCCAGATTCT
TAATTGCCTGATCTGCAGACCAGAGTAATGGCCAGTCAAGGTGACATCAA
GATGGAAAACTGGTGACCTTACTACTCATTGCTAATGTCAAGTACAGCCA
TACCAGGAAAACATTCTCCTTCAAAGCCTAGTCTAGAAGAGATGCAGGAC
TGTCTTCCCATCATGTGGCTTTATAGACAGGAATAAACGCTTTAGGGCCT
TCTTGAATTCACGGTATGAGTCCCCCTGCGTTTTGTGAGATCCTGTCTTA
TCTTTCCTTGTTTACACATGTTTTTACCCCCCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_h10.b1 MSMg01no423_h10.b1 CHROMAT_FILE:
MSMg01no423_h10.b1 PHD_FILE: MSMg01no423_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:09 2005
         (458 letters)



>mm_chr13_62958557_62959416
          Length = 860

 Score =  766 bits (396), Expect = 0.0
 Identities = 434/448 (96%), Gaps = 4/448 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattctcattatctcatatttgcaaagtcttaatgggactttaaaatgtgttttgatgc 67
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gaattctcatta-cttatatttgcaaagtcttaatgggactttaaaatgtgttttgatgc 596

                                                                       
Query: 68  c---tttttttttttttttttttaccctgtacaggtgtgttcagttgacatgacctctgt 124
           |   ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 595 cttttttttttttttttttttttaccccgtacaggtgtgttcagttgtcatgacctctgt 536

                                                                       
Query: 125 cagtactgtggggtagaaatcaccagaacacaggttaagggggcttgactgtcatgaaaa 184
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 cagtattgtggggtagaaatcaccagaacacaggttaagggggcttgactgtcatgaaaa 476

                                                                       
Query: 185 gaacctggctcagttttcttcatcttcacgtggtgttcaggaatctggacaggctgggct 244
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaacctggctcagttttctccatcttcacgtggtgttcaggaatctggacaggctgggct 416

                                                                       
Query: 245 ggggcaggcacagcagagcacctttgcttggttctcttttgcagaacagggccacattcg 304
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| 
Sbjct: 415 ggggcaggcacagcagagcacctttgcttggttctcttttgcaaaacagggccacgttca 356

                                                                       
Query: 305 tgctggagttgctcgtggccacagccaggagcacggttttaaggcatgatgaaaagaaat 364
           |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 355 tgctggagttgctcttggccacagccaggagtacggttttaaggcatgatgaaaagaaat 296

                                                                       
Query: 365 cacttcctttggacttccattttgattccagtgaagggcccctctgaagtcgaaggaagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 cacttcctttggacttccattttgattccagtgaagggcccctctgaagtcgaaggaagg 236

                                       
Query: 425 gacatacatgtgtgtgtgtgtggggggg 452
           ||||||||||||||||||||||||||||
Sbjct: 235 gacatacatgtgtgtgtgtgtggggggg 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 860
Length adjustment: 10
Effective length of query: 448
Effective length of database: 850
Effective search space:   380800
Effective search space used:   380800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)