BAC Information

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BAC

Clone NameMSMg01-424F23
Chromosome13 (Build37)
Map Location 48,001,162 - 48,192,944
singlet/doubletdoublet
Overlap gene4931429P17Rik
Upstream geneKif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
Downstream geneId4, LOC667351, Zfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424F23.T7 (MSMg01no424_f23.b1)MSMg01-424F23.TJ (MSMg01no424_f23.g1)
ACCAG518307AG518308
length741780
length of high quality
(start - end)		517 (50 - 566)218 (80 - 297)
definitionCHROMAT_FILE: MSMg01no424_f23.b1 PHD_FILE: MSMg01no424_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:19 2005CHROMAT_FILE: MSMg01no424_f23.g1 PHD_FILE: MSMg01no424_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,001,162 - 48,001,674)(48,192,729 - 48,192,944)
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCCTTTGCCATTTCTTTCCTTGAGGCTCCATGATTTCAGTC
CATGGAAGTCTGGGAGAGTCTAGATCAGCACTGTACACCTTTGCCTATCA
AAGGTCATTTGCATATATTTATGGTCAAGGGTATCGGCTTCTACTCATGG
TCTTTAGTGGGAATTTTCTAACATTGATTATTTATGGTCTTGTTACTATT
ATAATCTTTATTATTATAACAAAGAGTCACTATGTAGTATAAGGCTATCT
CCAAACTTGTAATCCTCCTGCCTCAGCCCCTCCAGAGCTGGCATCAGAGG
AATCCACCAATGTCAATTATACTTGCATCATTTGACCATGTCAGTCCAGT
CTGTACTTGGTCAGCACTACAGAAGACAGAGAAATCCAGAGATGGCTAAA
AGGGACAAAGAGGGAAAACAGGATTCATTGAGTGGCTCTCATTTCTTCTT
AAAAAGGGTCTGTCTCTTATTTACTTTTCCAGAAAAGAAGGTGGATAGAA
TTAAAACATAGAATTTCAGAGCAGGGGTCCAGCTACTTCCTTTTCCTAGC
TTCTCTGACATCGGGAGCAAAGAGTGAAAATGTGAAGCCCAAAATAAGCC
TTCTTGCTTTGCAATCTGTCTTTGAACTTTGATTATTTATGTTTCCCAAA
AAAGAGGGATCCAATGGATGTCTTATAACCCCAAGATTTTT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCACCAGTACTTTAGAAATG
CCATCTAAATATAGGGAGGGAAAAGACTCTTGCGCACAGCTCCTTCTAAT
CCCCATGGGATCACTGAGGAGGGTGGGTGGCATCTGTGTCTTAACCAGTG
AGGTCATCGAAACTTACAGACACTCAAGAAGTTTCTGTCCTGGGAAAAGT
GGGGGAGGGGGCGAGGGGAGGGACGCAGAGGGGGTGGGGGAGATGNNANN
NCNNCGNNNNANAGNCNGNNNGGGATTTTTTGTTTGGNNGAGTGGNTCTT
TGGAGTTTGGNNTATTTTTCTGGTCTCTCTTCTCTGCGGAGAGTGTCATA
TAACAGCTTGAGGTTAACTCACCAACTGATTCATATTTAATGATCCTATG
ACTTACTTTTCTGTGTTCTCTTATGTCCTCTATTGCCTGGCGTGTGCTTC
AAATATCCTTTCCATTTCTTGTCGACTTTAATGTATACTCTCCCGTCCTC
TCTTTGTGTAGCTTTTATTTCTTCTTTCTTGTTCCTTTTCTTTGCCTTCT
CTTTCATTCTTTTTTCGATTTGTTTTACCCTGTGCTTCCTCCCTTGCTTT
CTTAATTTTTTTTCTTCCTTTTTTTCTATACTCCTTCGGTTTTTGCATTT
CCTTTTCTCCTTCCCCTTCTCCACCTTTTTTCTTTCCCTTTTTCATCTTC
ACCTTTTTTTTCTTTCCATTCTATTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_f23.b1 MSMg01no424_f23.b1 CHROMAT_FILE:
MSMg01no424_f23.b1 PHD_FILE: MSMg01no424_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:19 2005
         (517 letters)



>mm_chr13_48000958_48001874
          Length = 917

 Score =  922 bits (477), Expect = 0.0
 Identities = 504/513 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccctttgccatttctttccttgaggctccatgatttcagtccatggaagtctgg 64
           ||||||||||  | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccctgggtcatttctttcctcgaggctccatgatttcagtccatggaagtctgg 264

                                                                       
Query: 65  gagagtctagatcagcactgtacacctttgcctatcaaaggtcatttgcatatatttatg 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 gagagtctagatcagcactgtacacctttggctatcaaaggtcatttgcatatatttatg 324

                                                                       
Query: 125 gtcaagggtatcggcttctactcatggtctttagtgggaattttctaacattgattattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcaagggtatcggcttctactcatggtctttagtgggaattttctaacattgattattt 384

                                                                       
Query: 185 atggtcttgttactattataatctttattattataacaaagagtcactatgtagtataag 244
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 atggtcttgttactactataatctttattattataacaaagagtcactatgtagtgtaag 444

                                                                       
Query: 245 gctatctccaaacttgtaatcctcctgcctcagcccctccagagctggcatcagaggaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctatctccaaacttgtaatcctcctgcctcagcccctccagagctggcatcagaggaat 504

                                                                       
Query: 305 ccaccaatgtcaattatacttgcatcatttgaccatgtcagtccagtctgtacttggtca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccaccaatgtcaattatacttgcatcatttgaccatgtcagtccagtctgtacttggtca 564

                                                                       
Query: 365 gcactacagaagacagagaaatccagagatggctaaaagggacaaagagggaaaacagga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcactacagaagacagagaaatccagagatggctaaaagggacaaagagggaaaacagga 624

                                                                       
Query: 425 ttcattgagtggctctcatttcttcttaaaaagggtctgtctcttatttacttttccaga 484
           ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 625 ttcattgagtggctctcatttcttcttgaaaagggtatgtctcttatttacttttccaga 684

                                            
Query: 485 aaagaaggtggatagaattaaaacatagaattt 517
           |||||||||||||||||||||||||||||||||
Sbjct: 685 aaagaaggtggatagaattaaaacatagaattt 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no424_f23.g1 MSMg01no424_f23.g1 CHROMAT_FILE:
MSMg01no424_f23.g1 PHD_FILE: MSMg01no424_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:19 2005
         (218 letters)



>mm_chr13_48192574_48193191
          Length = 618

 Score =  410 bits (212), Expect = e-119
 Identities = 215/216 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaccagtactttagaaatgccatctaaatatagggagggaaaagactcttgcgcacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 accaccagtactttagaaatgccatctaaatatagggagggaaaagactcttgcgcacag 312

                                                                       
Query: 61  ctccttctaatccccatgggatcactgaggagggtgggtggcatctgtgtcttaaccagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctccttctaatccccatgggatcactgaggagggtgggtggcatctgtgtcttaaccagt 252

                                                                       
Query: 121 gaggtcatcgaaacttacagacactcaagaagtttctgtcctgggaaaagtgggggaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gaggtcatcgaaacttacagacactcaagaagtttctgtcctgggaaaagtgggggaggg 192

                                               
Query: 181 ggcgaggggagggacgcagagggggtgggggagatg 216
           ||||||||||||||||||||||||||||||| ||||
Sbjct: 191 ggcgaggggagggacgcagagggggtgggggggatg 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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