Query= MSMg01no424_n23.b1 MSMg01no424_n23.b1 CHROMAT_FILE:
MSMg01no424_n23.b1 PHD_FILE: MSMg01no424_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:56 2005
(508 letters)
>mm_chr13_95968139_95969046
Length = 908
Score = 938 bits (485), Expect = 0.0
Identities = 500/507 (98%), Gaps = 5/507 (0%)
Strand = Plus / Plus
Query: 5 gaattctgtac---tttcaccattaggaaagtatctttactaccaatttctctgcatccc 61
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctgtacaaatt--accattaggaaagtatctttactaccaatttctctgcatccc 261
Query: 62 ttgaatcaacatgaagaactagcatacactgtaggattaaaagtgcccaaattatgcata 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttgaatcaacatgaagaactagcatacactgtaggattaaaagtgcccaaattatgcata 321
Query: 122 caactgtaggaacattccctacgtatttcttataaaacccaggaccaccagcccaagggt 181
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 322 caactgtaggaacattccctacatatttcttataaaacccaggaccaccagcccaagggt 381
Query: 182 ggtcccacccacaataagcttagccctctcccattaatcactaattcagaaaatacccta 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggtcccacccacaataagcttagccctctcccattaatcactaattcagaaaatacccta 441
Query: 242 taggcccgcctacatattccaatggctgttattattaagctttttattaatttgggtttc 301
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 442 taggcccgcctacatattccaatggctgttaatattaagctttttattaatttgggtttc 501
Query: 302 tactgctatgatgaaacgatcaaaagcaagttggggagggaaggatttgttcggcttata 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tactgctatgatgaaacgatcaaaagcaagttggggagggaaggatttgttcggcttata 561
Query: 362 cttccatatcagtgtttatcattgaaggaagtcaggacaggaactcaagcaaggcaggaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cttccatatcagtgtttatcattgaaggaagtcaggacaggaactcaagcaaggcaggaa 621
Query: 422 cctggatgcaggagctgacgcagaggccatgaagtggtgcctttaacttgcttcctcatc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cctggatgcaggagctgacgcagaggccatgaagtggtgcctttaacttgcttcctcatc 681
Query: 482 atgatctgctcagcctgcttttgttat 508
|||||||||||||||||||||||||||
Sbjct: 682 atgatctgctcagcctgcttttgttat 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_n23.g1 MSMg01no424_n23.g1 CHROMAT_FILE:
MSMg01no424_n23.g1 PHD_FILE: MSMg01no424_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:56 2005
(533 letters)
>mm_chr13_96156021_96156953
Length = 933
Score = 948 bits (490), Expect = 0.0
Identities = 514/526 (97%), Gaps = 7/526 (1%)
Strand = Plus / Minus
Query: 1 agagatggaattccacacttagctaggctagcctggcaggaatgctgttaacacactgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 agagatggaattccacacttagctaggctagcctggcaggaatgctgttaacacactgag 467
Query: 61 ccattttactggcccttgagtctactttattcattgtaatcctgttcagtacagctcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ccattttactggcccttgagtctactttattcattgtaatcctgttcagtacagctcaaa 407
Query: 121 aaccacacggtgatctcatttaaatttcttaatgactttctgaagatactaaccagaaat 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aaccacacagtgatctcatttaaatttcttaatgactttctgaagatactaaccagaaat 347
Query: 181 ttcccataccttagatatgattattataaagacagccaagtgcctctctcttttgagaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ttcccataccttagatatgattattataaagacagccaagtgcctctctcttttgagaag 287
Query: 241 cccagtcctgatctctcaaatgtgccatagtctttcccctgggtgcctgtaacctctctt 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cccagtcctgagctctcaaatgtgccatagtctttcccctgggtgcctgtaacctctctt 227
Query: 301 cttacaaatattaaagaagtctt-------ttgtgttttaatgtggatgagtgctttgcc 353
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 226 cttacaaatattaaagaagtcttttgaagattgtgttttaatgtggatgagtgctttgcc 167
Query: 354 tgcagagggtggcattggatgccccgagtctagagttacagatgtgtaggaaggaaggga 413
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 166 tgcagagggtggcattggatgccctgagtctagagttacagatgtgtaggaaggaaagga 107
Query: 414 tgctgagaactaaatctggtctgctataagacttgcaagtattcttaaccactgagccat 473
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 106 tgctgagaactaaatctggtctgctataagacttgcaagtactcttaaccactgagccat 47
Query: 474 ctcttcaacactaaagacatcttcccctccccccaacccccagaca 519
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 ctcttcaacactaaagacatcttcccctccccccaacccccagaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
