BAC Information

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BAC

Clone NameMSMg01-424P17
Chromosome13 (Build37)
Map Location 8,045,699 - 8,046,084
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667611, EG623516, LOC791083
Downstream geneLOC382722, Adarb2, EG666941, Wdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424P17.T7 (MSMg01no424_p17.b1)MSMg01-424P17.TJ (MSMg01no424_p17.g1)
ACCAG518773AG518774
length739761
length of high quality
(start - end)
387 (75 - 461)233 (328 - 560)
definitionCHROMAT_FILE: MSMg01no424_p17.b1 PHD_FILE: MSMg01no424_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:04 2005CHROMAT_FILE: MSMg01no424_p17.g1 PHD_FILE: MSMg01no424_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGACTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAAAGAGGATCC
GCGGAATTCCTTCTTGCCTGATGGTCCAGTTGCCTCATCCTGTCCTGCTA
TGAGTATATCAGAAGCACCTTGCATGGATAGGACATATCTTAAGATGTTA
ATAAGCAGTACCATGGTTAATTTTTTTTGGGACAACTGATGCATTGAACA
TGCAGAATAAGAGCTGCACTAATGCCTTTTCAACTTAACTTTGTGACATC
CTGATTGAGATGGAGCAAAGAGCAAGTGACTGGCGTTTTAGAAAGCTTCA
AAGTTTTGGGGGTTGTGAATATAGTTTTTATAAACATTCATATACAGATT
TCCAGGGCATGCAAATCTTTACATCAATTCAAGCTAAATATAAAAAAGTT
AATATTTATAAACTTTTACTAAACTGTTTATAATGAACTATTTTGATAAT
TTTGCTGTGCAAAATAGTTTGCCGTTTATAGCAGCCACATTTTGCGCAGT
GGTTCATCTACCTTAAATATCTTCTCTCAGTCAGCCTTTACCTCTTGATT
AATATCTTACCTAGGTATTTTTTCCAGTTTCCTCTGTTACCCATGATAAA
ATTCTCTTCTTTTATGAGTCTGACATTTTCCGACTACTCAGATCAGTGAG
ATCATATTGCATATACGGCATGTGCGACATATACAGTACTTATTTGGACG
ACGTGCGGAAACTCATTAATTGGATTTTGGACTTCCTTT
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGAAATTCATTTCTCCTTTGCTGCTTTTCATGA
AGCAGTGTGTTCTATGAGTGTGAAAATGCATCAGGGAAAAAAAAAACTAC
AGACCCTCAGCTCTTAAACTTGAAGGCACTGTTATGCTTTGGTCCTTGGT
GTTAGATTTGTGATGGAAGGAACCAGGAACTGCAGCCTTCCCATAGGTCA
CAAGGATGTGTCCCTGGACTGTTTGAGCCTTCCCTTGATTTCAACTTCCA
TAAGACTTAGTATTTTAATGTCTTTTCTTTTCATGTAAGGACAAAGGCTA
AGAGACTATGTCACCCTTGATGTGCAGTGGTCCTGATGATTCTTTTTTTT
TTTCATAGACAGGGTTTTTCTGTATAGTCCTGGCTGTCCTGGAACTCACT
TTGTGGACCAGGCTGGCCTCGAACTCATAAATCCGCCTGCCTTTGCCTCC
CAAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCAGCTGGTCCTGATG
ATTCTTACAGTGCACATACCAGCTTTCTCTGCTTCAATAACACAATTTAC
AGCCCCCCTTTACCCATGTCCATTCACTCCATGCCCCTATTTCCTATGCC
AAACCATATGAAACCTCATACAGATAAACCTCAAGCCTATAAATAGTATA
TGTTTCGAATATAACTTGTTTTCATTACATAGGCAATATGATTTGTACAC
ATCCTTACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_p17.b1 MSMg01no424_p17.b1 CHROMAT_FILE:
MSMg01no424_p17.b1 PHD_FILE: MSMg01no424_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:04 2005
         (387 letters)



>mm_chr13_8045667_8046451
          Length = 785

 Score =  623 bits (322), Expect = 0.0
 Identities = 371/390 (95%), Gaps = 7/390 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccagttgcctcatcctgtcctgctatgagtatatcagaagcaccttgcatggataggac 60
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 418 tccagttgcctcatcctgtcctgctatgaatatatcagaagcaccttgcatggacaggac 359

                                                                       
Query: 61  atatcttaagatgttaataagcagtaccatggttaatttttttt--gggacaactgatgc 118
           ||||||||||||||||||||||||||||||||||||    ||||  ||||||||||||||
Sbjct: 358 atatcttaagatgttaataagcagtaccatggttaa----ttttgggggacaactgatgc 303

                                                                       
Query: 119 attgaacatgcagaataagagctgcactaatgccttttcaacttaactttgtgacatcct 178
           | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 actgaatatgcagaataagagctgcactaatgccttttcaacttaactttgtgacatcct 243

                                                                       
Query: 179 gattgagatggagcaaagagcaagtgactggcgttttagaaagcttcaaagttttggggg 238
           || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
Sbjct: 242 gactgagatggagcaaagagcaagtgactggcattttagaaagcttctaagttttgggag 183

                                                                       
Query: 239 ttgtgaatatagtttttataaacattcatatacagatttccagggcatgcaaatctttac 298
           ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 182 ttgtgaatagagtttttataaacattcatatacaggtttccagggcatgcaaatctttac 123

                                                                       
Query: 299 atcaattcaagctaaatat-aaaaaagttaatatttataaacttttactaaactgtttat 357
           ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 122 atcaattcaagctaaatataaaaaaagttaatattcataaacttttactaaactgtttaa 63

                                         
Query: 358 aatgaactattttgataattttgctgtgca 387
           ||||||||||||||||||||||||||||||
Sbjct: 62  aatgaactattttgataattttgctgtgca 33


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 785
Length adjustment: 9
Effective length of query: 378
Effective length of database: 776
Effective search space:   293328
Effective search space used:   293328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)