BAC Information

Click to search

BAC

Clone NameMSMg01-425B15
Chromosome13 (Build37)
Map Location 89,147,446 - 89,291,391
singlet/doubletdoublet
Overlap geneEdil3
Upstream geneLOC667230, EG435375
Downstream geneHapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425B15.T7 (MSMg01no425_b15.b1)MSMg01-425B15.TJ (MSMg01no425_b15.g1)
ACCAG518863AG518864
length755766
length of high quality
(start - end)		595 (35 - 629)466 (65 - 530)
definitionCHROMAT_FILE: MSMg01no425_b15.b1 PHD_FILE: MSMg01no425_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:13 2005CHROMAT_FILE: MSMg01no425_b15.g1 PHD_FILE: MSMg01no425_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,147,446 - 89,148,037)(89,290,926 - 89,291,391)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTCCA
CTTTATTTACCAGCGAACAGGATAACCAATAAGTACATGTATCTCTATTG
CTGAGTGTTACAGCATTGCCAATTTCTCTACCCCATGATTGATAGAAGCC
TTGCTGTTCACCATCTGTTATTAAAGAGTCATGTTCCTTGAGCATAGTTT
CTTTATATCATTTTCAATATTGTGGGCATTATACATTTCCTATTACCTCT
ATGAAAGACATACAGGCTTTGAATATAACATCTGGCTTCATTGTTTTCTT
GCTCTTCATCATGTTGCTGACATCTTCACTGTTTATTGAAATGTTTCAAG
CTTACATATGAAGCTTTTGGAGACTGATTCAACTGCTTAAAAAAACCTAA
ACTATGACATGAACAGGTTCAAATGCATATGCATACCCCATAAAAGTCTC
AACTTTAATGAGTAAGCCTGTTTACAGGACCTCTGGATTTAAAAATTATA
AAAGGAACGTTGGCCCTTTATTGAGTACAGCCATTTTTTGATAGTTTATG
TTGAGCCAATTAACTTACACTTATAAATGGGCGTAGCAGAAAAGAGAATC
TTAAGATCTATTTTGAGATGACTCATACATTACTTAAAAGAAGAGCAGAA
GATTCTTTGAAGGAAGCTGATATGTAGTTATAAAGGGACTTCAGAGTTTC
CAAATTAATTGAACTCAAGCAAATGAGGNAAAGATAAGTTGCATGTAAAG
TCAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACCTTATAGGAATGATAGAAAACACAAACTAACTGT
TATTATAAAGAAATTTTGGTTTCTTCTTTATAAACTCCTGACTAGACAAG
GAGAGCAATTCATGAGGATACCAGGAACCTTCTAACTTATGGTTCACTGT
TACCTGAATCATGGTCTAAGATTAAATCCCATATTAAGTCCCTGACAGCA
GGGCAGTGGGAAATACAAATGGAGAGTTGAAGGGATGCAAGCTCTGCTTT
CTCAAGGAGGATTCCCAGACATTACCCTCTGACAGATCTGCTTATAAGCC
TTGGCTCTGTAAAAGTCTCATAACCACAGTGTTGTAGTTTGGGTTTATGA
CTGGGAAGAAACATTATGACCACTGCAACTCTTTGTTTGTTTGTTTTTGT
TTTTGTTTTTGTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCC
TGGAACTCACTCTGTAGACCAGGCTAGCCTCAAACTCAGAAATTCGNCTG
CCTCTACCTCCCAAGTGCTGGGATTAAAGGCATGCGCCAACAGGAAAACG
ATNCATTCAGGCTGGTTTCTGAGGTATAGCTCTCAACATGACTGTCCGTA
AAGCATCCTTTAAAAATGGTGGTGGGAAAAGGGCTGAAAGTTTAAATCTT
TATTCTAAAGGGGACGGTTGGCCCAAAAGAGGGAGCTTTATTACACCTGA
CCTCCCCCAGGAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_b15.b1 MSMg01no425_b15.b1 CHROMAT_FILE:
MSMg01no425_b15.b1 PHD_FILE: MSMg01no425_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:13 2005
         (595 letters)



>mm_chr13_89147243_89148237
          Length = 995

 Score = 1075 bits (556), Expect = 0.0
 Identities = 583/592 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttccactttatttaccagcgaacaggataaccaataagtacatgtatctcta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttccactttatttaccagcgaacaggataaccaataagtacatgtatctcta 263

                                                                       
Query: 64  ttgctgagtgttacagcattgccaatttctctaccccatgattgatagaagccttgctgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgctgagtgttacagcattgccaatttctctaccccatgattgatagaagccttgctgt 323

                                                                       
Query: 124 tcaccatctgttattaaagagtcatgttccttgagcatagtttctttatatcattttcaa 183
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 324 tcaccatctgttattaaagagtcatgttcctcgagcatagtttctttatatcattttcaa 383

                                                                       
Query: 184 tattgtgggcattatacatttcctattacctctatgaaagacatacaggctttgaatata 243
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tattgttggcattatacatttcctattacctctatgaaagacatacaggctttgaatata 443

                                                                       
Query: 244 acatctggcttcattgttttcttgctcttcatcatgttgctgacatcttcactgtttatt 303
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acatctggtttcattgttttcttgctcttcatcatgttgctgacatcttcactgtttatt 503

                                                                       
Query: 304 gaaatgtttcaagcttacatatgaagcttttggagactgattcaactgcttaaaaaaacc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaaatgtttcaagcttacatatgaagcttttggagactgattcaactgcttaaaaaaacc 563

                                                                       
Query: 364 taaactatgacatgaacaggttcaaatgcatatgcataccccataaaagtctcaacttta 423
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taaaatgtgacatgaacaggttcaaatgcatatgcataccccataaaagtctcaacttta 623

                                                                       
Query: 424 atgagtaagcctgtttacaggacctctggatttaaaaattataaaaggaacgttggccct 483
           ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 624 atgagtaagcctgcttacaggacctctggatttaaaaattataaaaggaacattggccct 683

                                                                       
Query: 484 ttattgagtacagccattttttgatagtttatgttgagccaattaacttacacttataaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttattgagtacagccattttttgatagtttatgttgagccaattaacttacacttataaa 743

                                                               
Query: 544 tgggcgtagcagaaaagagaatcttaagatctattttgagatgactcataca 595
           |||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 744 tgggcgtagcagaaaagagaatcttaagttctattttgagataactcataca 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no425_b15.g1 MSMg01no425_b15.g1 CHROMAT_FILE:
MSMg01no425_b15.g1 PHD_FILE: MSMg01no425_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:13 2005
         (466 letters)



>mm_chr13_89290877_89291742
          Length = 866

 Score =  901 bits (466), Expect = 0.0
 Identities = 466/466 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   accttataggaatgatagaaaacacaaactaactgttattataaagaaattttggtttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 accttataggaatgatagaaaacacaaactaactgttattataaagaaattttggtttct 456

                                                                       
Query: 61  tctttataaactcctgactagacaaggagagcaattcatgaggataccaggaaccttcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tctttataaactcctgactagacaaggagagcaattcatgaggataccaggaaccttcta 396

                                                                       
Query: 121 acttatggttcactgttacctgaatcatggtctaagattaaatcccatattaagtccctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 acttatggttcactgttacctgaatcatggtctaagattaaatcccatattaagtccctg 336

                                                                       
Query: 181 acagcagggcagtgggaaatacaaatggagagttgaagggatgcaagctctgctttctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 acagcagggcagtgggaaatacaaatggagagttgaagggatgcaagctctgctttctca 276

                                                                       
Query: 241 aggaggattcccagacattaccctctgacagatctgcttataagccttggctctgtaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aggaggattcccagacattaccctctgacagatctgcttataagccttggctctgtaaaa 216

                                                                       
Query: 301 gtctcataaccacagtgttgtagtttgggtttatgactgggaagaaacattatgaccact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtctcataaccacagtgttgtagtttgggtttatgactgggaagaaacattatgaccact 156

                                                                       
Query: 361 gcaactctttgtttgtttgtttttgtttttgtttttgttttcgagacagggtttctctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 gcaactctttgtttgtttgtttttgtttttgtttttgttttcgagacagggtttctctgt 96

                                                         
Query: 421 gtagccctggctgtcctggaactcactctgtagaccaggctagcct 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  gtagccctggctgtcctggaactcactctgtagaccaggctagcct 50


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |