BAC Information

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BAC

Clone NameMSMg01-425L01
Chromosome13 (Build37)
Map Location 33,283,164 - 33,283,650
singlet/doubletsinglet
Overlap genenone
Upstream geneGmds, Wrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c
Downstream geneSerpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425L01.T7 (MSMg01no425_l01.b1)MSMg01-425L01.TJ (MSMg01no425_l01.g1)
ACCAG519312AG519313
length744741
length of high quality
(start - end)
527 (38 - 564)487 (70 - 556)
definitionCHROMAT_FILE: MSMg01no425_l01.b1 PHD_FILE: MSMg01no425_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:58 2005CHROMAT_FILE: MSMg01no425_l01.g1 PHD_FILE: MSMg01no425_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:58 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGG
GTCCTGTTACTCAGGTGGGCAAGGAGTTGGCGGATGACAAATAGACACGA
ACACAAGAAGAGTGTTGGATCTGAATGTAATTTCTCAAGGCAAGCATCAG
ACTTATAGAATAGAAGAAAACAAGGAAATTAGGTTTACATCAGCCACGGT
ACACTGAAGTTATCCAATGTATGATGACACAAAACAGAGAAATGCATACA
TAAAGGACTGACAGGAACCAGGCAGTGATAACAACTGAGATAAAAAATGT
CCCTATATCAAGTCCGAAATTCTAGGAGCCAGGTGAGGATTTCACACCCT
AGTCACAATTCTAGTCTAATGTATAACCCATCACCAGGGGGTTTCTGCTC
TTGCTGATCTTTTCATGAATAATACAATACTCTGGTTCCTCCTTAAGCCA
CAACCCTCTTTCTTCCTAGACCATTGTAAATACTTGCATATGGGAGTGAT
TCACTGTTATTCTAAGTTTATTTTGTTGAACTAGCCCTGAGATATTTAGC
TCTTATCCAGTAAAATACGGCAACGCCTGATTTCTTTTACTGTCTTTTCT
TTCCAAACCGGAGGCATTTTGTCCTGATTAAATCTAATCATTCCCTGGTG
GGCCCCTATAATACACCCATATCGATGGTTAACCCCCTTTTAACCCCTTC
CCCCTCCTTATTACACCAACATTCTCTTATTCCTCCTCCTCTAG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGAGGAGCCTGTATGAAGTAGAATTGGAT
TTATGAAGAACCAAACACATATATATTTAAACACAACAATAAATGAGGGG
ACACCCAGCAGGAAATATGAGGATGAGGCAAACCTAAGTGTAGTGGGGTC
TCAAGGGAGAGCATGGCCTCAGTGTCTCAACAGCAGCTTCACTTGTGGTT
TTCTTGACTCTCAATAATGACATCTTACAGAGTTGCTCCAATAATCCTCA
TTATTCATTATATTATTCATTATATTTAACAGAGATCCATTATTATTACT
TAGTTACTTAAAGACAAGCATTTAAAAATTACAATGGATGAAGTTGTATG
AATCTAAGACAAAAAAGCAGTACTTCAACAATGAAAAATGTCTTGTTGGG
CAACAGGAACATTATGAAATTTTTTACAAACACAGGGAAGTTCTCCCTGT
CTATAGGATCACTCTTTTCATTCTATCTGAANATATCAAGGTTTCAGTTT
GTTGGTCCTGACAGGTTACTCAATTTCAGGCTATATGCGGTGCATTCCTG
CATAAAGAAAAGCTTTCCACTCCCCATGGTATCCTTTGTAAGTCATGGTT
GGTTAGCCTTTCCCCCCATCCTTTTTCTTCCTTGAAGCTTTGCTTGTATT
AACTTTTGGTCTTTTTTCGGGGTGTCTCAACCTCCGGCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_l01.g1 MSMg01no425_l01.g1 CHROMAT_FILE:
MSMg01no425_l01.g1 PHD_FILE: MSMg01no425_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:58 2005
         (487 letters)



>mm_chr13_33282964_33283850
          Length = 887

 Score =  913 bits (472), Expect = 0.0
 Identities = 483/487 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaggagcctgtatgaagtagaattggatttatgaagaaccaaacacatatatattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 caggaggagcctgtatgaagtagaattggatttatgaagaaccaaacacatatatattta 628

                                                                       
Query: 61  aacacaacaataaatgaggggacacccagcaggaaatatgaggatgaggcaaacctaagt 120
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aacacaacaatccatgaggggacacccagcaggaaatatgaggatgaggcaaacctaagt 568

                                                                       
Query: 121 gtagtggggtctcaagggagagcatggcctcagtgtctcaacagcagcttcacttgtggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtagtggggtctcaagggagagcatggcctcagtgtctcaacagcagcttcacttgtggt 508

                                                                       
Query: 181 tttcttgactctcaataatgacatcttacagagttgctccaataatcctcattattcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tttcttgactctcaataatgacatcttacagagttgctccaataatcctcattattcatt 448

                                                                       
Query: 241 atattattcattatatttaacagagatccattattattacttagttacttaaagacaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atattattcattatatttaacagagatccattattattacttagttacttaaagacaagc 388

                                                                       
Query: 301 atttaaaaattacaatggatgaagttgtatgaatctaagacaaaaaagcagtacttcaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atttaaaaattacaatggatgaagttgtatgaatctaagacaaaaaagcagtacttcaac 328

                                                                       
Query: 361 aatgaaaaatgtcttgttgggcaacaggaacattatgaaattttttacaaacacagggaa 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 327 aatgaaaaatgtcttgttgggcaacaggaacattatgaaattctttacaaacacagggaa 268

                                                                       
Query: 421 gttctccctgtctataggatcactcttttcattctatctgaanatatcaaggtttcagtt 480
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 267 gttctccctgtctataggatcactcttttcattctatctgaaaatatcaaggtttcagtt 208

                  
Query: 481 tgttggt 487
           |||||||
Sbjct: 207 tgttggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)