XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TCCATCTCCGTGACTAAGAACAGAGTATGGATATAATGCTCTTACACAAA
ACAAATGAACAAATGAACAAATGAATAAGAAACAAGATTTTAAAAACAAA
AACAAACAAAAACCCACCATGAATTAAATGCTAATTGTGAAGAAGAAACA
AAGATGAGATGTGTGCGCGTGCATGTGTGTGTGCGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTAAATAAATACTCTTATGATCTGAACAGGGACAAT
GGGGGACAATTGATTTCTTTTCTATTTCTTTTTAAAATAAAGTGGATAGC
TTGACTGAATTTCAAAATATTCCCCAGTCTTATTAGTTATTAAAAATCAT
CAGAAAAAGATGCTAAACATTACTTTAAGATTGTTTTAAGAGATAAAAAT
GCTGCAGCAGCTGGGAACCACAAGGAGCCCAGTAGACTCAGTTTCCATCT
CCTCCTGACCACCCCTTCCCACGAACTCCATCTCCCCTTCTGGCCTGCAC
CTTCCACCAGGGCAGATCACCAGCTTGTCTGCTCCTCTGAATAGCCAACA
GTCTGAAGGCCTCCCAGAAGTCTTGTTGCATGCAGGGCAACTATCCTATC
TCTCTAGAGGTCTCCTAGGATGTCTGATGTCCCTAAGGCATAATTACCCA
CAGTCTGATTGCTCCCTTTATAAAACCTACTTCCAG

CTGTGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGCCTAAGCTACCTGGCAAGACCCGA
TCTCCTAGGTAGGTACGTAGGTAGGTAGGTAGGTAGGTANNNNNNNNNNN
NNNNTTTTNNNNNNGGGNGNNNNNNTNNNNNTTNTTTTTTTTTTTTTTTT
NNTTTTTTTTTNNNTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNT
TTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTC
TCCCCCCCCTCTCCCCTCCCTCCCCTCTCCCCCTTCCTTTTCCCTCTCCC
CCCCCCCCCCTCTCTCTTCCTCCCTTTTCCCCCCCCCCCTCTTTCCCCCC
CTTTTCTCCCCCCCCCTCCCCTCCCTCCCCCTTCCTCTCCTTCCCCCTCC
CTTCCTCTTCTTCCCTTTTCCCCCCCCTCCTCCCCCTCCCCTCTTCCCCC
CCTCTCTCCTTTTTCTCCCCTTTTTCCTTCCCCCCCCCCTCCCCCTCTCC
CCTCCCCTTCCCCCTTCCCCCTCTCCCCCCCCCCTCTCCCCCCCTCTCCC
TTTCCTCCTTCCCCCCCCTCCCCCTCCCCCCTCTCCCCTCCTTCTCCCTC
TTCCCCCCCCCCCTCTCCTCCCCCCCCTCCCCCCTCCTTCTTCCTTTCCT
CCTTTCCTCCCCTTCCCTTTTTCTCTCCCCCTCC

Query= MSMg01no425_m11.b1 MSMg01no425_m11.b1 CHROMAT_FILE:
MSMg01no425_m11.b1 PHD_FILE: MSMg01no425_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:05 2005
         (536 letters)



>mm_chr13_92952677_92953612
          Length = 936

 Score =  963 bits (498), Expect = 0.0
 Identities = 524/536 (97%), Gaps = 6/536 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gactaagaacagagtatggatataatgctcttacacaaaacaaatgaacaaatgaacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 gactaagaacagagtatggatataatgctcttacacaaaacaaatgaacaaatgaacaaa 876

                                                                       
Query: 61  tgaataagaaacaagattttaaaaacaaaaacaaacaaaaacccaccatgaattaaatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tgaataagaaacaagattttaaaaacaaaaacaaacaaaaacccaccatgaattaaatgc 816

                                                                       
Query: 121 taattgtgaagaagaaacaaagatgagatgtgtgcgcgtgcatgtgtgtgtgcgtgtgtg 180
           ||||||||||||||||||||||||||||||||||||      |||| ||||||||||| |
Sbjct: 815 taattgtgaagaagaaacaaagatgagatgtgtgcg------tgtgcgtgtgcgtgtgcg 762

                                                                       
Query: 181 tgtgtgtgtgtgtgtgtgtgtgtgtaaataaatactcttatgatctgaacagggacaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tgtgtgtgtgtgtgtgtgtgtgtgtaaataaatactcttatgatctgaacagggacaatg 702

                                                                       
Query: 241 ggggacaattgatttcttttctatttctttttaaaataaagtggatagcttgactgaatt 300
           |||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ggggacaattgataccagttctatttctttttaaaataaagtggatagcttgactgaatt 642

                                                                       
Query: 301 tcaaaatattccccagtcttattagttattaaaaatcatcagaaaaagatgctaaacatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tcaaaatattccccagtcttattagttattaaaaatcatcagaaaaagatgctaaacatt 582

                                                                       
Query: 361 actttaagattgttttaagagataaaaatgctgcagcagctgggaaccacaaggagccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 actttaagattgttttaagagataaaaatgctgcagcagctgggaaccacaaggagccca 522

                                                                       
Query: 421 gtagactcagtttccatctcctcctgaccaccccttcccacgaactccatctccccttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gtagactcagtttccatctcctcctgaccaccccttcccacgaactccatctccccttct 462

                                                                   
Query: 481 ggcctgcaccttccaccagggcagatcaccagcttgtctgctcctctgaatagcca 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ggcctgcaccttccaccagggcagatcaccagcttgtctgctcctctgaatagcca 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)