BAC Information

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BAC

Clone NameMSMg01-426A11
Chromosome13 (Build37)
Map Location 70,748,883 - 70,898,793
singlet/doubletdoublet
Overlap geneBC018507, EG620473, Adamts16
Upstream geneSrd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291, 4930520P13Rik, EG633042
Downstream gene8030423J24Rik, LOC627230, LOC100042360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426A11.T7 (MSMg01no426_a11.b1)MSMg01-426A11.TJ (MSMg01no426_a11.g1)
ACCAG519569AG519570
length825788
length of high quality
(start - end)		142 (72 - 213)549 (70 - 618)
definitionCHROMAT_FILE: MSMg01no426_a11.b1 PHD_FILE: MSMg01no426_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:24 2005CHROMAT_FILE: MSMg01no426_a11.g1 PHD_FILE: MSMg01no426_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,748,883 - 70,749,024)(70,898,258 - 70,898,793)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAGATCCGCGGAATTCCT
GGAACTTTTTCCAGAAGAAATTAGAAAAACAAAAAAACCCCAAAACCCCA
CAAACCTTCCCTGGGCCAACTGGAAGCAAAGGAGATCGACTACGGATGTG
ATCCTCACTGAATCACAGTGTGCCATGCATTCTATCCCTAGTCCCCAGCA
CAGTGTCCTGAGCAGAACTGGAGCCTCAGACTAGATCTACTGTACGTGGA
AAATGTGCCATTTCCCTGAGTCCCACAGTTTGTTAACACGATTGGGGAAA
AGTTCAGATGGAATCATTCTTTTGTGACAATAAAGATGACTTATTACAAT
CTATTGTGTAGGACAGGATGATTACCTGGTCTTCCACATACTCTTGCCTC
GCATGCCTTAGTCTCCCCTCCCAGTGCCCTGATGAGAGCTGCTACCAATT
GCTGACTGTTATCTGCTTGGTTTTTAGAGTTCTCACTTCCCTCTTATATT
TTCCATGTCCCTCATTCTCCCTTTAATCACTGGCATTCTGATATTTATCT
CTATTCCTTGGTATTTAAAGGCTGTCCTTCTTTTCTTGCCTTTAGTAGCT
TTCTGTTAATGTTCTTCCTCCTGTGGATCCTTTCTGGTCCCCCTTCCCCT
GTTTACCCTTCTGTTCCACTGCTTTTTCCCTTCCTTTTTTTTTTTTTTTG
GTTTTAACTTTCCTTTTTTCCTTGTTATACTTATTCCTCTCTTTATTCCC
TGCTTCACTGTTTTTGTATTTACTTATTTTTTTTCCTCCATCTCACTAGT
TTATTCCTTTTTCTCCCCCCCGGTT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAATGAATTTCCATTCTCAATCCTATCTTC
CTACCTCCTGAAGGAAGGAAAATAAGTGAAAGGGAAAGAAAAGTGGTATG
TTTTCTGGAGAGGGGAGATACTTTCTTCAGTAGACCTAAGTTGGATCTAT
CTGACAGGTTTCTTCAAGGATGCCTTGAAGTTTAGAATGAAACAAAGAAT
TCCCCCTTACCAAGGAGCAGCCATCCTTCCTCCCACACCTTGTCCATCAG
GACAAGAGTCAAATGTCTGTCCTTGGTCCTGGAAACTGGCCTTATCCTGG
TGGGCATAGGCAGATCTTCTCTACACCCTACTGGGTTTATGCTCATGCAT
GTAGGACTTCATGTTTGTACATATAGAACCTGAGAAGGTGGGACATCTGT
GTCTATGTCAATATTGCCTATTCACTTTCTCATTTCAATATGGATTTGTT
TCTCCAAACACATGCAGGAGTTTAATTTTAGTTTCCAAGGTGTCTTATTT
AGTGTTTACATTTCTGTGAACAGACAGCATGACCAATGCAGCTCTTACAA
AAAAAAAAAAAAAACAATATTTAATTTGGGCTGGTCTACAGTTTCAGAGA
TTCAGTCCCTCATTCTTCAAGGCGGGAAGGATGGCAGCATTGAAGCAGAT
ATTGTGTTGAAGGAGCTAAAGTTCATATTATTTTTCCAAAGGAACCCAGA
AAAAAGGGGTTTCTAATGCCTCGGGAATAAGGTCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_a11.b1 MSMg01no426_a11.b1 CHROMAT_FILE:
MSMg01no426_a11.b1 PHD_FILE: MSMg01no426_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:24 2005
         (142 letters)



>mm_chr13_70748683_70749224
          Length = 542

 Score =  267 bits (138), Expect = 2e-76
 Identities = 141/142 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaaaaacaaaaaaaccccaaaaccccacaaaccttccctgggccaactggaagcaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaaaaacaaaaaaaccccaaaaccccacaaaccttccctgggccaactggaagcaaag 260

                                                                       
Query: 61  gagatcgactacggatgtgatcctcactgaatcacagtgtgccatgcattctatccctag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 gagatcgactacggatgtgatcctcactgaatcacagtgtgccatgcattctgtccctag 320

                                 
Query: 121 tccccagcacagtgtcctgagc 142
           ||||||||||||||||||||||
Sbjct: 321 tccccagcacagtgtcctgagc 342


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space:    71556
Effective search space used:    71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no426_a11.g1 MSMg01no426_a11.g1 CHROMAT_FILE:
MSMg01no426_a11.g1 PHD_FILE: MSMg01no426_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:24 2005
         (549 letters)



>mm_chr13_70898123_70899071
          Length = 949

 Score =  998 bits (516), Expect = 0.0
 Identities = 531/536 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatgaatttccattctcaatcctatcttcctacctcctgaaggaaggaaaataagtga 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aaaatgagtttccattctcaatcctatcttcctacctcctgaaggaaggaaaataagtga 612

                                                                       
Query: 61  aagggaaagaaaagtggtatgttttctggagaggggagatactttcttcagtagacctaa 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 611 aagggaaagaaaagtggtatgttttctggagaggggagacactttcttcagtagacctaa 552

                                                                       
Query: 121 gttggatctatctgacaggtttcttcaaggatgccttgaagtttagaatgaaacaaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 551 gttggatctatctgacaggtttcttcaaggatgccttgaagtttagagtgaaacaaagaa 492

                                                                       
Query: 181 ttcccccttaccaaggagcagccatccttcctcccacaccttgtccatcaggacaagagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttcccccttaccaaggagcagccatccttcctcccacaccttgtccatcaggacaagagt 432

                                                                       
Query: 241 caaatgtctgtccttggtcctggaaactggccttatcctggtgggcataggcagatcttc 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 431 caaatgtctgtccttggtcctggaaactgaccttatcctggtgggcataggcagatcgtc 372

                                                                       
Query: 301 tctacaccctactgggtttatgctcatgcatgtaggacttcatgtttgtacatatagaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tctacaccctactgggtttatgctcatgcatgtaggacttcatgtttgtacatatagaac 312

                                                                       
Query: 361 ctgagaaggtgggacatctgtgtctatgtcaatattgcctattcactttctcatttcaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctgagaaggtgggacatctgtgtctatgtcaatattgcctattcactttctcatttcaat 252

                                                                       
Query: 421 atggatttgtttctccaaacacatgcaggagtttaattttagtttccaaggtgtcttatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atggatttgtttctccaaacacatgcaggagtttaattttagtttccaaggtgtcttatt 192

                                                                   
Query: 481 tagtgtttacatttctgtgaacagacagcatgaccaatgcagctcttacaaaaaaa 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tagtgtttacatttctgtgaacagacagcatgaccaatgcagctcttacaaaaaaa 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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