BAC Information

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BAC

Clone NameMSMg01-426G02
Chromosome13 (Build37)
Map Location 78,817,243 - 78,939,764
singlet/doubletdoublet
Overlap genenone
Upstream gene1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
Downstream geneEG666883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426G02.T7 (MSMg01no426_g02.b1)MSMg01-426G02.TJ (MSMg01no426_g02.g1)
ACCAG519836AG519837
length778778
length of high quality
(start - end)		555 (27 - 581)580 (67 - 646)
definitionCHROMAT_FILE: MSMg01no426_g02.b1 PHD_FILE: MSMg01no426_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:54 2005CHROMAT_FILE: MSMg01no426_g02.g1 PHD_FILE: MSMg01no426_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,817,243 - 78,817,781)(78,939,185 - 78,939,764)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTA
TCATTGATTACAAGCAGTATTACAGACTGTGACTTCTAGCCAACTGAGTG
CTCACTGACATTACTGTTAATATCTTAATCGGAAAACTGCTTCAACCTTC
TGAATAAAAAGCAGAGGAAGAAGAGGAGCCAGGAGAAAGATATATATTCA
TTTAGAAGCAGACCTTTCTGATTGAAATTAATAATTTTGAGACACATAAA
AATTAATTACTCTGCGATTGTAAGTAGGCAGTGGATTTATAGTAAATGAC
AGAGTGTTTACAAATTTTCCTGACTACTCGATTAGAAAATGCACAAGTGC
AGGCGGCAGCCGAGCATGCATTATTTAAGTGGCTGGTGTCTGGCGACAAT
CTGGAAACTGCAATTGTTGTGGATGCGTAGGAAAATTCTCACTTTCTGAG
AGAAATTCTTTCACCTTTGTGTGCCCACAGCATGGATCTTTCCTCGTGGC
AGCTGTAGGAAACACAGGAACTCTGTGACCTGGAAAATGTGGGACAACTG
ACACAAGGTGACCCTGTAAGGCTGGGGTAGGCCCAATTAATTTACAATTT
TGCTTGGCCTTGTCTCTTCCCATTTTCTGAATCCTCTGGAAAAATGATTA
ATGCATACACTGCCAATGTGAAAATATTTTTGACCCTATTAAAGTCGACC
AAGGAAAAACCAAGGGTAGGGCGGCATTGTATCCAACTGGGCTTTATTAA
TTTTGATTGCAGGCTCTGTTTGAGCAAG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATAATTAGCTTTCAATATTTAAACAGAACAGTAG
AAATGGAATATGTAAAAATATCAGAAATAAAAGCCACTTCACTACAGGAT
GAGCATATGCTAACACACCACATACTGGCTTTTGAATTTAGTTCTATTAT
GATTCACTATATCTATTTTTTAAAGTGAAATAAGGGTTTAGATAATAGCT
ACTATAAATATATGAAATGTCAAATTTAGAATGTAATGCTTAAACATTTG
TCTTTGGGGGAGTATTACTAAACTTAACTTTTATTAACTCAAGGAATCAA
CTAGAAATATAGTGGTGCTAGTGAACCTTTGAGAATCTTTTATTTTATCA
CTCTTAATGCATGTTTAATATTTAACATTCATCTTATTACAGACAGGAAT
TGTGAAATGCTTGTGCTGTTTCTAAACAGTTTTAAAGTTCAGTGCACAGT
CACAATTCAGAGGGGAGATTTCACACATTTATGGAAAATAAGCCATTTTT
GCAGTAAAGTTGCAAAGTGTGAAAGAATTCTTGTTTTATCTACTTTACTT
ATCATGTTTATGAGTTATTTTGCCTGGAAGTAAATTGACAAGTTGTCAAT
GAACAATAGACAGTGCCCTAGCTAGGCTTTTCACAGGTTCAGATGCCTTT
GGGCAAAAGGGCTAAATCCGTAGTTGCAACCTAACATATGGGACACTGAA
AAAAGTGGCAACAGGGTGAGAGAAGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_g02.b1 MSMg01no426_g02.b1 CHROMAT_FILE:
MSMg01no426_g02.b1 PHD_FILE: MSMg01no426_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:54 2005
         (555 letters)



>mm_chr13_78817027_78817981
          Length = 955

 Score = 1011 bits (523), Expect = 0.0
 Identities = 535/539 (99%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattctatcattgattacaagcagtattacagactgtgacttctagccaactgagtgct 76
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattctatcattgattagaagcagtattacagactgtgacttctagccaactgagtgct 276

                                                                       
Query: 77  cactgacattactgttaatatcttaatcggaaaactgcttcaaccttctgaataaaaagc 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cactgacattactgttaatatcttaatcggaaaactgcttcaaccttctgaataaaaagc 336

                                                                       
Query: 137 agaggaagaagaggagccaggagaaagatatatattcatttagaagcagacctttctgat 196
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 337 agaggaagaagaggagccaggagaaagatatatatccatttagaagcagacctttctgat 396

                                                                       
Query: 197 tgaaattaataattttgagacacataaaaattaattactctgcgattgtaagtaggcagt 256
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 397 tgaaattaataattttgagacacacaaaaattaattactctgcgattgtaagtaggcagt 456

                                                                       
Query: 257 ggatttatagtaaatgacagagtgtttacaaattttcctgactactcgattagaaaatgc 316
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 457 ggatttatagtaaatgacagagtgtttacaaattttcctgactattcgattagaaaatgc 516

                                                                       
Query: 317 acaagtgcaggcggcagccgagcatgcattatttaagtggctggtgtctggcgacaatct 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 acaagtgcaggcggcagccgagcatgcattatttaagtggctggtgtctggcgacaatct 576

                                                                       
Query: 377 ggaaactgcaattgttgtggatgcgtaggaaaattctcactttctgagagaaattctttc 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ggaaactgcaattgttgtggatgcgtaggaaaattctcactttctgagagaaattctttc 636

                                                                       
Query: 437 acctttgtgtgcccacagcatggatctttcctcgtggcagctgtaggaaacacaggaact 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 acctttgtgtgcccacagcatggatctttcctcgtggcagctgtaggaaacacaggaact 696

                                                                      
Query: 497 ctgtgacctggaaaatgtgggacaactgacacaaggtgaccctgtaaggctggggtagg 555
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ctgtgacctggaaaatgtgggacaactgacacaaggtgaccctgtaaggctggggtagg 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no426_g02.g1 MSMg01no426_g02.g1 CHROMAT_FILE:
MSMg01no426_g02.g1 PHD_FILE: MSMg01no426_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:54 2005
         (580 letters)



>mm_chr13_78938985_78939964
          Length = 980

 Score = 1106 bits (572), Expect = 0.0
 Identities = 578/580 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataattagctttcaatatttaaacagaacagtagaaatggaatatgtaaaaatatcagaa 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 780 ataattagctttcaatatttaaacagaacagtagaaatggaatgtgtaaaaatatcagaa 721

                                                                       
Query: 61  ataaaagccacttcactacaggatgagcatatgctaacacaccacatactggcttttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ataaaagccacttcactacaggatgagcatatgctaacacaccacatactggcttttgaa 661

                                                                       
Query: 121 tttagttctattatgattcactatatctattttttaaagtgaaataagggtttagataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tttagttctattatgattcactatatctattttttaaagtgaaataagggtttagataat 601

                                                                       
Query: 181 agctactataaatatatgaaatgtcaaatttagaatgtaatgcttaaacatttgtctttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 agctactataaatatatgaaatgtcaaatttagaatgtaatgcttaaacatttgtctttg 541

                                                                       
Query: 241 ggggagtattactaaacttaacttttattaactcaaggaatcaactagaaatatagtggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggggagtattactaaacttaacttttattaactcaaggaatcaactagaaatatagtggt 481

                                                                       
Query: 301 gctagtgaacctttgagaatcttttattttatcactcttaatgcatgtttaatatttaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gctagtgaacctttgagaatcttttattttatcactcttaatgcatgtttaatatttaac 421

                                                                       
Query: 361 attcatcttattacagacaggaattgtgaaatgcttgtgctgtttctaaacagttttaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 attcatcttattacagacaggaattgtgaaatgcttgtgctgtttctaaacagttttaaa 361

                                                                       
Query: 421 gttcagtgcacagtcacaattcagaggggagatttcacacatttatggaaaataagccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gttcagtgcacagtcacaattcagaggggagatttcacacatttatggaaaataagccat 301

                                                                       
Query: 481 ttttgcagtaaagttgcaaagtgtgaaagaattcttgttttatctactttacttatcatg 540
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 300 ttttgcagtaaagttgcaaagtgtgaaagaattcttgttttatctgctttacttatcatg 241

                                                   
Query: 541 tttatgagttattttgcctggaagtaaattgacaagttgt 580
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tttatgagttattttgcctggaagtaaattgacaagttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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