Query= MSMg01no426_h01.b1 MSMg01no426_h01.b1 CHROMAT_FILE:
MSMg01no426_h01.b1 PHD_FILE: MSMg01no426_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:58 2005
(443 letters)
>mm_chr13_57294739_57295580
Length = 842
Score = 787 bits (407), Expect = 0.0
Identities = 431/439 (98%), Gaps = 1/439 (0%)
Strand = Plus / Minus
Query: 5 gaattcacactacaccatagctccagtgcctacacagctccaacataatggaggcctcaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gaattcacactacaccatagctccagtgcctacacagctccaacataatggaggcctcaa 583
Query: 65 gttctcctgtaggttgttcagtgtggcggcagttgattatgggaaaccaagatttgaatg 124
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 582 gttttcctgtaggttgttcagtgtggcagcagttgattatgggaaaccaagatttgaatg 523
Query: 125 agaaataaagttatagcaaacagatggcagatgccatttcactgaccttggtgttatcca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agaaataaagttatagcaaacagatggcagatgccatttcactgaccttggtgttatcca 463
Query: 185 tgtcaaagggctgacagtgtatcacagttaacacccaagggctggtaggatttgcctgaa 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 462 tgtcaaagggctgacagtgtatcacagttaacacccaagggctggtaggatttgtctcaa 403
Query: 245 agcaagtaaagccccctgagctactggagaatgtttaagggtgttatggccacaaaagag 304
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agcaagtaaagtcccctgaactactggagaatgtttaagggtgttatggccacaaaagag 343
Query: 305 taagcttgagaaattttatttttctctgaatcatgattccatttttttgggggggataac 364
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 342 taagcttgagaaattttatttttctctgaatcatgattccattttttt-ggggggataac 284
Query: 365 ccccaaaatataagcaaccaaagtagaaacaaattgagtaacataaaactaacagctgct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ccccaaaatataagcaaccaaagtagaaacaaattgagtaacataaaactaacagctgct 224
Query: 425 gtgcatccaagattgactg 443
|||||||||| ||||||||
Sbjct: 223 gtgcatccaaaattgactg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 842
Length adjustment: 10
Effective length of query: 433
Effective length of database: 832
Effective search space: 360256
Effective search space used: 360256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no426_h01.g1 MSMg01no426_h01.g1 CHROMAT_FILE:
MSMg01no426_h01.g1 PHD_FILE: MSMg01no426_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:59 2005
(535 letters)
>mm_chr13_57150494_57151428
Length = 935
Score = 926 bits (479), Expect = 0.0
Identities = 521/535 (97%)
Strand = Plus / Plus
Query: 1 aaatttaaccggctaccctgtgctcatctgactccccacccaaccccagcagcatactct 60
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 aaatttaactggctaccctgtgctcatctgactccccacccaaccccagcagtatactct 260
Query: 61 atgatttgagtcctctgtccagttgtcactgctgactctcatgtgctcaaaacatccttt 120
|||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||
Sbjct: 261 atgatttgagtcctctgtccaggtgtcactgctgactctcatgtgcgcaaagcatccttt 320
Query: 121 cgtaaaacgagtgggttgcttgccccttcctagggcctacagcttctgagtttgatgttc 180
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 cataaaacgagtgggttgcttgccccttcctagggcctacagcttctgagtttgttgttc 380
Query: 181 ttctctactcagaagctgtattggctgtgctgtaacacaaatcataattctattgtattg 240
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ttctctactcagaagcagtattggctgtgctgtaacacaaatcataattctattgtgttg 440
Query: 241 tgacaaaatcataatcgtggcagtcccttcctaagatccttctatggagttctctcagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgacaaaatcataatcgtggcagtcccttcctaagatccttctatggagttctctcagaa 500
Query: 301 tctacaaccccttacctgacctgctcccacttcacctggtagacctctcctctgccccct 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 tctacaaccccttacctgacctgctcccacttcacctggtagacctcacctctgccccct 560
Query: 361 ttcccaccattcactggctcttgctttagcgacttgtgtgtgctctgagagcccgctgat 420
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 561 ttcccaccattcactggctcttgcttttgagacttgtgtgtgctctgagagcccgctgat 620
Query: 421 cttgtcagtgtccttgggtgtctgctgttcctcagtctggaaggctcttcagctaagtgt 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttgtcggtgtccttgggtgtctgctgttcctcagtctggaaggctcttcagctaagtgt 680
Query: 481 ttgcatagagcaatcctctggtttctatggcccctgctcgagtgttttgtcagag 535
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgcatagagaaatcctctggtttctatggcccctgctcgagtgttttgtcagag 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
