BAC Information

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BAC

Clone NameMSMg01-426K21
Chromosome13 (Build37)
Map Location 69,680,977 - 69,893,337
singlet/doubletdoublet
Overlap geneA530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik
Upstream geneLOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2, LOC666205, LOC218332, Pols
Downstream gene4930547H16Rik, Med10, EG620143, LOC100042291, 4930520P13Rik, EG633042, BC018507, EG620473, Adamts16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426K21.T7 (MSMg01no426_k21.b1)MSMg01-426K21.TJ (MSMg01no426_k21.g1)
ACCAG520062AG520063
length825779
length of high quality
(start - end)		254 (72 - 325)367 (75 - 441)
definitionCHROMAT_FILE: MSMg01no426_k21.b1 PHD_FILE: MSMg01no426_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:18 2005CHROMAT_FILE: MSMg01no426_k21.g1 PHD_FILE: MSMg01no426_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,893,084 - 69,893,337)(69,680,977 - 69,681,343)
sequence
TCCATATTTTGGGGGCGCTAAACGACTCACTATATTCCGCAAATCCGCGG
AATTCCTTCAGTGTTACAACACACCAAAGAAGTGTAAGCCAAATAAACCC
TTTCCTCCCCAACTTGGTCTCTACTCATGACGTTGCATTGCAGTAACAGA
AACTGTAAGACATTTCTCTACCGTGAATTGCCAGCAGACTGCCTGAGCTA
AGACACACTGAGACCCTTGAGAAGTTCACTCAGGTGAGGGCTTGCTGACA
GGTGCTGACCTGCTGTCTCCCAGCTTGGGATTGTAGGAGCAAAGCTACAG
GGACTGACAGGTCTGGAGAAAACATCACTTATCTGTGGTGTGGCCAGGAC
ACAGGCTTTCCACTGGTGTATTCATTCTTGAATCGCTTCGATTCTACCAA
AAGNACTCAACAATTCGCAAAGCAGTGCACCCCGAGGATAACAGATATGA
CCTGATGGTCTCTTTTCCGTTCATTGGGAAATTTCCAACTGTACACAAAG
GGGTTTTTAAAAAATTGGGATTCCCCTCCACGTTTTTTTTAAAAATCCCC
GGGGTGGGGCCCCCCCTCAAATTTATGGGTCTCCTTCCCTAAATCACCAA
AACCCCCCCTCTGGGTGCCTTTTATTGCCATAACATCAAAACTCTCCCTC
CCGTATTGCACCATCCATTATCTTCTTCCTCACCCTTCTTAATTATATAA
CTTCTTCTCTCTCCTCCATACCTCTCTCTTTCCCCCTCCACCCGTCATAA
CTTTCCTCTCCTTCTCTAAATCTCCTTCCTTTTCTCCTCCTCCCCATCTT
TACAATACATACTCTCCCCCTCGTG

NCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTGTTTAGCCCACGCTGGCCTCAAA
CTTGGGACAGCCTCTTATCCCAGCATCCCGCATGTGCTTACCATGTGAGC
TGCCATATCTAGCAGCTGAGTTATTAGCTTTTTTTTTTTTTTTTTTTTTT
AGTTTTGGTTTTTCGAGACAGTGTTTCTCTGTGTAGCCCCCGGCTATCCT
GAAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATTCACCTGC
CTCTGCCTCCCAAGTGCTGGGATTGAAGGCATGTGCTACCACTGCTCGAC
AAGTTATTAGCTCTTGTCCATGGCATTTACGGAGGCAAGAGGAGGAATAT
CTGGGAGACCAACCCCTAGAGGAAAGCTGCCTTGAGCTCCCAAGTCATAG
AACGTGCTTTCTCACGCCAGAGTAACAAGTTGGACCTGGAGAATTCTGAG
CCAGGCAGTTAGATTGAACTGGCCTTCTCTAGAGGGACATACTCTATGCC
TGTGGAAAGGAGCAAGCTGTGGGGGGATGCCCCGTAACTCTGTGGAGTTG
CGCGGAAGAAACCTAGCCCCGGGGGGGATATTTTTTAAGGAAACCCCCCG
GCCCTTTGTGGGGTTTGCCATAAAAAAAAACTCCCTCCCATTGGTCTTCC
TACCACTTGGGGTCGGCCCCCCTTTTTTTCTCCCTCCGTTTATCTATATT
TCCTCACTTTCTTCCTCCCCTTTTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_k21.b1 MSMg01no426_k21.b1 CHROMAT_FILE:
MSMg01no426_k21.b1 PHD_FILE: MSMg01no426_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:18 2005
         (254 letters)



>mm_chr13_69892797_69893450
          Length = 654

 Score =  491 bits (254), Expect = e-143
 Identities = 254/254 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccaaagaagtgtaagccaaataaaccctttcctccccaacttggtctctactcatgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 caccaaagaagtgtaagccaaataaaccctttcctccccaacttggtctctactcatgac 482

                                                                       
Query: 61  gttgcattgcagtaacagaaactgtaagacatttctctaccgtgaattgccagcagactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gttgcattgcagtaacagaaactgtaagacatttctctaccgtgaattgccagcagactg 422

                                                                       
Query: 121 cctgagctaagacacactgagacccttgagaagttcactcaggtgagggcttgctgacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cctgagctaagacacactgagacccttgagaagttcactcaggtgagggcttgctgacag 362

                                                                       
Query: 181 gtgctgacctgctgtctcccagcttgggattgtaggagcaaagctacagggactgacagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtgctgacctgctgtctcccagcttgggattgtaggagcaaagctacagggactgacagg 302

                         
Query: 241 tctggagaaaacat 254
           ||||||||||||||
Sbjct: 301 tctggagaaaacat 288


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no426_k21.g1 MSMg01no426_k21.g1 CHROMAT_FILE:
MSMg01no426_k21.g1 PHD_FILE: MSMg01no426_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:18 2005
         (367 letters)



>mm_chr13_69680777_69681543
          Length = 767

 Score =  710 bits (367), Expect = 0.0
 Identities = 367/367 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtttagcccacgctggcctcaaacttgggacagcctcttatcccagcatcccgcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtttagcccacgctggcctcaaacttgggacagcctcttatcccagcatcccgcatg 260

                                                                       
Query: 61  tgcttaccatgtgagctgccatatctagcagctgagttattagctttttttttttttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcttaccatgtgagctgccatatctagcagctgagttattagctttttttttttttttt 320

                                                                       
Query: 121 ttttttagttttggtttttcgagacagtgtttctctgtgtagcccccggctatcctgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttagttttggtttttcgagacagtgtttctctgtgtagcccccggctatcctgaaa 380

                                                                       
Query: 181 ctcactctgtagaccaggctggcctcgaactcagaaattcacctgcctctgcctcccaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcactctgtagaccaggctggcctcgaactcagaaattcacctgcctctgcctcccaag 440

                                                                       
Query: 241 tgctgggattgaaggcatgtgctaccactgctcgacaagttattagctcttgtccatggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctgggattgaaggcatgtgctaccactgctcgacaagttattagctcttgtccatggc 500

                                                                       
Query: 301 atttacggaggcaagaggaggaatatctgggagaccaacccctagaggaaagctgccttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttacggaggcaagaggaggaatatctgggagaccaacccctagaggaaagctgccttg 560

                  
Query: 361 agctccc 367
           |||||||
Sbjct: 561 agctccc 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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