BAC Information

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BAC

Clone NameMSMg01-426O04
Chromosome13 (Build37)
Map Location 66,722,407 - 66,722,825
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik
Downstream geneMzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426O04.T7 (MSMg01no426_o04.b1)MSMg01-426O04.TJ (MSMg01no426_o04.g1)
ACCAG520217AG520218
length794791
length of high quality
(start - end)
478 (37 - 514)419 (69 - 487)
definitionCHROMAT_FILE: MSMg01no426_o04.b1 PHD_FILE: MSMg01no426_o04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:35 2005CHROMAT_FILE: MSMg01no426_o04.g1 PHD_FILE: MSMg01no426_o04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:35 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCA
TCTTCATGAGAAGGCAGGCAGGAAGAGACTATCTTCCAGCCAAACAGTAG
GTGGGGCTGTTTTGTACTACCCAAAGCTCCAAACACCACAACCCCAGTAA
TTCACTTCCTTCAAAAAAGTAAGATCTATTCCTACAAGACACACCTACTA
ATAGTGCCACTGCTTATGGCCAAGCATATCCAAATTAACACAGTTTATAT
TTTCTATAAATACTTTAATACATTTAAATATGATTAGGACATGCAAGGCT
TTACCACATTGGTTATATTGATAAGGTTTCTCTCTAGTATGCGTTCCTTT
ATGTATTCAGAGACTACTGTGGCATTTAAAGGATTTTCCAACTTGACTAC
ATTCACAAGTGTTGGGAGGCAAACTGAGGCTCACAAGAAACGGGGTACAC
CTGGGAGGCAGACTGGAGCTGAAAGACAGAGAACTAGACGGTCAAGAGAA
ATAATGGAGCTAAGTCAAGGTTCCTGATCAAAGCTCATATGTTTAATAGC
ATATGTGCTTATAAAGGTGAAGAGGGCCCATTCCACCAAAACATTCTTGG
TGCTTGGAACCAGCTGCACGTGATGACTTGCAGGGCCGGGTGGAAGTCTT
TGGAAAAATACACGGCGCCTTTCGCAAGGTGTTACAACTCTTGACAAAAT
GGGTGCGCGATTAAAATACTAAATGGCCTAGCCCATCTCGGTCCCCCTCT
CTCCCGGTTCCTTTTTCTCGAGTCCTCGTATGCTTCATTCCCGG
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACTTTGGTAAAATACATGCCACATGTTTTCC
AGTATTAATTGCCCATCCCCCACCCCACCCCTTCCTCACTATAAATTTCT
AGATATTTTCTTAGAACTAACTTTCAGGTAAAGGTCTGTTCTCATGAGGT
TTCTCTCCTGTGTGTAGTCTCTGATGTCAGAGATGACCTAACAGTAAAGA
CTTTGAACATTTACATTTGAAAGATCACCCTCCTGTATGTATTCTTTGAT
GAGTTCTAAGATGATCTTTCTTGGTGAAGGGTTTGTCTTATTTGCTTCAT
TTTTAGATATTCTCTAGTTTGTGCATTCTTTGATGAGTGTAAAAAGTACA
TTTAAGTCTAAAGAATTCATCACATTCATTACATTTATAAGGTTTCTCTC
CTGTATGAATTACCTGATGAATACTAAGACTGTGTTTGTGGGTAAGGCGT
TTGTCCTATTCACTAAACTTTTAAGGTTTTTCTTCTGTTTGAACTCTTTT
GACGATTTTTATGAACTGTTTTTGGTATAACAGTATTTTTCACATTTTTC
TACTTTTTTTATCATTTTCTCCTGTCTTGCACCTTTTGGATGATTATTAT
TATTTTCTTCGTGTCGTGCTCTTTTGTTCCCTCTGGCTCCTTTCGTTTAC
GCTTTCCCCTCTGCTTTTTTCCCCGTATTCCGGTTCCTTTCTACTTCTTT
GCGTTTCACCTTTTATTTTCTCCTATTTTCGTTCTTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_o04.g1 MSMg01no426_o04.g1 CHROMAT_FILE:
MSMg01no426_o04.g1 PHD_FILE: MSMg01no426_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:35 2005
         (419 letters)



>mm_chr13_66722207_66723025
          Length = 819

 Score =  795 bits (411), Expect = 0.0
 Identities = 417/419 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactttggtaaaatacatgccacatgttttccagtattaattgcccatcccccaccccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactttggtaaaatacatgccacatgttttccagtattaattgcccatcccccaccccac 260

                                                                       
Query: 61  cccttcctcactataaatttctagatattttcttagaactaactttcaggtaaaggtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccttcctcactataaatttctagatattttcttagaactaactttcaggtaaaggtctg 320

                                                                       
Query: 121 ttctcatgaggtttctctcctgtgtgtagtctctgatgtcagagatgacctaacagtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctcatgaggtttctctcctgtgtgtagtctctgatgtcagagatgacctaacagtaaa 380

                                                                       
Query: 181 gactttgaacatttacatttgaaagatcaccctcctgtatgtattctttgatgagttcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactttgaacatttacatttgaaagatcaccctcctgtatgtattctttgatgagttcta 440

                                                                       
Query: 241 agatgatctttcttggtgaagggtttgtcttatttgcttcatttttagatattctctagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatgatctttcttggtgaagggtttgtcttatttgcttcatttttagatattctctagt 500

                                                                       
Query: 301 ttgtgcattctttgatgagtgtaaaaagtacatttaagtctaaagaattcatcacattca 360
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtgcattctttgatgagtgtaaaaactacatttaagtctaaagaattcatcacattca 560

                                                                      
Query: 361 ttacatttataaggtttctctcctgtatgaattacctgatgaatactaagactgtgttt 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttacatttataaggtttctctcctgtatgaattacctgatgaatactaagactgtgttt 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)