BAC Information

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BAC

Clone NameMSMg01-427F14
Chromosome13 (Build37)
Map Location 35,222,427 - 35,222,892
singlet/doubletsinglet
Overlap genenone
Upstream gene2310047M15Rik, 3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
Downstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427F14.T7 (MSMg01no427_f14.b1)MSMg01-427F14.TJ (MSMg01no427_f14.g1)
ACCAG520571AG520572
length748739
length of high quality
(start - end)		563 (52 - 614)604 (78 - 681)
definitionCHROMAT_FILE: MSMg01no427_f14.b1 PHD_FILE: MSMg01no427_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:12 2005CHROMAT_FILE: MSMg01no427_f14.g1 PHD_FILE: MSMg01no427_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAATTACTAGCTCCCCCTGTGTCTACATGGCAAAGAGAG
CTGCATAATCAGGAAGAATGGGTGGCTGTGGTCTTCTGTGGATCACAAAC
AGGCCCAAGTTGCATTGGGCTAGAAAATAAATGTACCTTTCAGTAGAAAG
GGAACCTGTCACCTTTGATGCTTTACAATATGGGGAAGTGTCATTTTTGT
GTGTGCCAAGAACTTTTATTTATATCATCCAAACCCATCTCACACATCTC
ACATCATCTTGTGGTAGTTCTCTCTCTCTCCCTCTCCCTCTCCCTCCCCC
TCTCCCTCTCCCTCTCCCTCTCCCCCCCTCTCTCTCTCTCTCTCTCTCTT
TCTCTTTCCTTTCTTCTCTCTCTCTCTTCTTTCATCCCCTTCTCTCTTCC
TGCCCTTCCCTCTCCCCATTTTCTTTCTTCCTTTCTTCCATCCTCTCTCT
TCCCTTCTTTCTTTCCTCTTCTCCTCCTCCTCTCCCTTCTTTATTTTTGG
TTTTTTGAGACACAGTTTCTCTGCGTAGCCCTAGCTGTTCGTGAACTTGT
TCTGTAGTCCAGAATCACCTTGAATTCAAAGACCCCTGCCTCTGCTTCCT
GAATTATGAGATTCAAGTTTTGTGCCACCATGCACTGCTCAAGTGATGGC
ATTTTCAATTGTCCCAGAATATCCTTGCTTTCAGGGTAAATGCCTACC

TTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTTTTTGTTTTTCTAGTTCTT
TGAAGACTGATATAGAAATTTTGATGGTAACTTTGTTGGCTTTGTTAATT
ACTTTTGCTAGTTAACTATTTTCACAATATTAATTCAGCTGATCCAGGAG
CATGGAAAGCTACTCCATCATCTAGTATCTTCTTTGGTTTCTTCTCTCAA
TGCCTTAAAGATTTTGTTGTAGAAGTCTCTTTTTCCCTTGCTTAGGTTTA
TTCTTAGAGACTTTTCTGATTTGTTTTGTTAACCTGATAGAATCCAAAGT
CACCTGGGAAGAAGGAACCTCAACTGAAGAACTGCCTTGATCTGAATGGC
CTGAGTCTATCTAGTCTTTGACAGACCGTCTTGATTGATGGTTGATGTGG
GAGGGCTTAGCCCACAGTGGTTAACACTATCCTTAGCCAGGTAGACTTTG
TCTGCATATGAAAGCTAGCTCTGAGTGTGAGCCAAAAAGTGAGCTAGTAA
TCTGGATTCCTCCATAGTTTCTTCTTAAGTTTCTTCCTGAGTTCCTGACC
TGAGTTCCCTCAGTGATGAACTATGATTGGGAAATATAAGCTGAAATAAA
CCCTTCCCACCTCTACATCACTTTGGCTAAGGAGTCCATCACAGCACCAG
AAAAGGAAACTAGAACGGAACTTTTTTTTTTTGAGCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_f14.b1 MSMg01no427_f14.b1 CHROMAT_FILE:
MSMg01no427_f14.b1 PHD_FILE: MSMg01no427_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:12 2005
         (563 letters)



>mm_chr13_35222427_35223387
          Length = 961

 Score =  694 bits (359), Expect = 0.0
 Identities = 446/483 (92%), Gaps = 20/483 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaattactagctccccctgtgtctacatggcaaagagagctgcataatcagga 63
           |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 466 ggaattcaaattacaagctccccctgtgtctacatggcaaagagagctgtataatcagga 407

                                                                       
Query: 64  agaatgggtggctgtggtcttctgtggatcacaaacaggcccaagttgcattgggctaga 123
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agaaagggtggctgtggtcttctgtggatcacaaacaggcccaagttgcattgggctaga 347

                                                                       
Query: 124 aaataaatgtacctttcagtagaaagggaacctgtcacctttgatgctttacaatatggg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 346 aaataaatgtacctttcagtagaaagggaacctgtcacctttgatgctttacaata--gg 289

                                                                       
Query: 184 gaagtgtcatttttgtgtgtgccaagaacttttatttatatcatccaaacccatctcaca 243
           |||||||| ||||||||||||||||||||||||||||| |||||||  ||||||||||||
Sbjct: 288 gaagtgtcgtttttgtgtgtgccaagaacttttatttacatcatccccacccatctcaca 229

                                                                       
Query: 244 catctcacatcatcttgtggtagttctctctctctccctctccctctccctccccctctc 303
           |||||||||||||||||| ||||||||||||||||| ||||| ||||| ||    |||||
Sbjct: 228 catctcacatcatcttgtagtagttctctctctctctctctctctctctct----ctctc 173

                                                                       
Query: 304 cctctccctctccctctccccccctctctctctctc---tctctctctttctctttcctt 360
            ||||| ||||| ||||      |||||||||||||   ||| ||||| ||||||  || 
Sbjct: 172 tctctctctctctctct------ctctctctctctcctttct-tctctctctctt--ctc 122

                                                                       
Query: 361 tcttctctctctctcttctttcatccccttctctcttcctgcccttccctctccccattt 420
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcttctct-t-tctcttctttcatccccttctctcttcctgcccttccctctccccattt 64

                                                                       
Query: 421 tctttcttcctttcttccatcctctctcttcccttctttctttcctcttctcctcctcct 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 63  tctttcttcctttcttccatcctctctcttcccttctttctttccacttctcctcctcct 4

              
Query: 481 ctc 483
           |||
Sbjct: 3   ctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 961
Length adjustment: 10
Effective length of query: 553
Effective length of database: 951
Effective search space:   525903
Effective search space used:   525903
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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