BAC Information

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BAC

Clone NameMSMg01-429A05
Chromosome13 (Build37)
Map Location 88,198,198 - 88,198,762
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675707
Downstream geneLOC667230, EG435375, Edil3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429A05.T7 (MSMg01no429_a05.b1)MSMg01-429A05.TJ (MSMg01no429_a05.g1)
ACCAG521843AG521844
length744749
length of high quality
(start - end)
517 (36 - 552)567 (66 - 632)
definitionCHROMAT_FILE: MSMg01no429_a05.b1 PHD_FILE: MSMg01no429_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:21 2005CHROMAT_FILE: MSMg01no429_a05.g1 PHD_FILE: MSMg01no429_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAAC
TGTGCAAACCCAAATGTCTGAGAAGCACCTAAAGAAATGTTCAACATCCT
TGGTGATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACA
CCAGTCAGAATGGATAAGATCAAAAACTCAGGTGACAGCAGATGCTGGCA
AGGATGTGGAGAAAGAGAAACACTCCTCCATTGCTTGTGGGGTTGCAAGC
TTGTACAACCACTCTGGAAATCAGTTTGCCGGTTCCTCAGAAAATTGGAC
ATTGTACTACCTGAGGACCCAGCTATACTGCTACTGGGCATATATCCAAA
AGATGCTCTAACATATAACAAGGACACATGTTCCACTATGTTCATAGCAG
CCTTATTTATAATAGCCAGAACCTGGAAAGAACCCAGATGTCCTTCAACA
GAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTATTC
TGCTATTAAAAACAATGACTTCATGAAATTCTTTTTTTTTTTTTTTTGGG
TTTTCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCTTGGAACTCACTT
TGTAGACCAGACTGGCCTCCAACTCAGAAATCTGCCTGCCTCTGCCTCCT
GAGAGCTGGGATTAAAGGCATGTGCCACCATGGCTGGCTGACTTTATGAA
ATTGTTAGGCAGATGGAGGGACTAAAAAATTTCCTCCCGAGTGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATGGATGTACATAGAAAAATGTTGAGTTGTAAAAG
ATACTTTTGTTCCTTCAAGAGTCTCCAACACAAGAAATTCTAGTGGGGAA
ATGATTGTTTGATTATCTGAGAACAATACAGATAAATTTCCAGGATGCTA
TGTTGGTGAAATTCTTCAGTGGTTCAGAAACTTTCAGCATCTTATTCTGA
AAAATGGCTATATTTTATTCACCAAAATGAATTGGTATAGGGTTTTAACA
CTTAAAAGCCAATAAACAGCAAATATTTTAAAGTCAGTGTTAATTTTTAT
TCATTTATTATACAAAACTTATAATGCATTTGTTCATTGAATTGTAGATA
ATAGGCTGAATAAGAAAGAGAAAGCAAACTGTTCAAAGTTGCTTTTCTGG
CTTTGTTTGCATGTAGTACCAAGGAAGTGTTCATGAACCCTGAAAGACAG
ACCAAAGAGAGAATCTCAGGTGTAGAAGACACCATAGAAGAGATTGAAAA
AAACTCTCAAAGAAAATGTGAAACATAAAATATTCCTAACTCAAAGCATC
CAAGAAATTCCCACCATAATGAAAAGACCANATCTAAGAATAATTAGAGT
ATCAGAAAAAGAAGATTCCCAGGTCAAAGGACCTGAAAATGTCTTCAGCA
AAGTTATAGAAAAAAACTTTCTCAACCTAAAGAAAGAGATGGCCATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_a05.g1 MSMg01no429_a05.g1 CHROMAT_FILE:
MSMg01no429_a05.g1 PHD_FILE: MSMg01no429_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:22 2005
         (567 letters)



>mm_chr13_88197998_88198964
          Length = 967

 Score = 1031 bits (533), Expect = 0.0
 Identities = 557/565 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatgtacatagaaaaatgttgagttgtaaaagatacttttgttccttcaagagtctc 60
           ||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 201 atggatgtacatagaaagatgttgagttgtaaaagatgctttttttccttcaagagtctc 260

                                                                       
Query: 61  caacacaagaaattctagtggggaaatgattgtttgattatctgagaacaatacagataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacacaagaaattctagtggggaaatgattgtttgattatctgagaacaatacagataa 320

                                                                       
Query: 121 atttccaggatgctatgttggtgaaattcttcagtggttcagaaactttcagcatcttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttccaggatgctatgttggtgaaattcttcagtggttcagaaactttcagcatcttat 380

                                                                       
Query: 181 tctgaaaaatggctatattttattcaccaaaatgaattggtatagggttttaacacttaa 240
           ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 381 tctgaaaaatggctatattttattcactaaaatgaattggtaaagggttttaacacttaa 440

                                                                       
Query: 241 aagccaataaacagcaaatattttaaagtcagtgttaatttttattcatttattatacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagccaataaacagcaaatattttaaagtcagtgttaatttttattcatttattatacaa 500

                                                                       
Query: 301 aacttataatgcatttgttcattgaattgtagataataggctgaataagaaagagaaagc 360
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 aacttataatgcatttgtttattgaattgtagataataggctgaataagaaagagaaaac 560

                                                                       
Query: 361 aaactgttcaaagttgcttttctggctttgtttgcatgtagtaccaaggaagtgttcatg 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaccgttcaaagttgcttttctggctttgtttgcatgtagtaccaaggaagtgttcatg 620

                                                                       
Query: 421 aaccctgaaagacagaccaaagagagaatctcaggtgtagaagacaccatagaagagatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaccctgaaagacagaccaaagagagaatctcaggtgtagaagacaccatagaagagatt 680

                                                                       
Query: 481 gaaaaaaactctcaaagaaaatgtgaaacataaaatattcctaactcaaagcatccaaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaaaaaactctcaaagaaaatgtgaaacataaaatattcctaactcaaagcatccaaga 740

                                    
Query: 541 aattcccaccataatgaaaagacca 565
           |||||||||||||||||||||||||
Sbjct: 741 aattcccaccataatgaaaagacca 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)