BAC Information

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BAC

Clone NameMSMg01-429F13
Chromosome13 (Build37)
Map Location 64,462,733 - 64,621,626
singlet/doubletdoublet
Overlap geneCtsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298
Upstream geneFancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik
Downstream genePpia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429F13.T7 (MSMg01no429_f13.b1)MSMg01-429F13.TJ (MSMg01no429_f13.g1)
ACCAG522097AG522098
length757721
length of high quality
(start - end)
501 (30 - 530)432 (76 - 507)
definitionCHROMAT_FILE: MSMg01no429_f13.b1 PHD_FILE: MSMg01no429_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:48 2005CHROMAT_FILE: MSMg01no429_f13.g1 PHD_FILE: MSMg01no429_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:48 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(64,462,733 - 64,463,224)(64,621,195 - 64,621,626)
sequence
GCGGCGCTAAACGACTCACTATTTTCAGAGGATCCGCGGAATTCTGCTAT
CTGAATCAGGTGGAATTGAGCATCCTTATTCTGTTTCTCTCAAGGAGCTT
TCGGACTGCAACTGCTTTTTTTTATCAAATGGGAAAGATCCTCAGGGGCA
TCAGAGGCAAGGCCTTAAGGATTCTCAAGGTTTTATTTCTAGTCATAAAA
CTGACCTGTGCCACACCATGAGCCCCTCAGGATCACACCTATCTGGGAGA
GAGTCAGGCCTTTGTTGGCCAATTTGTAAATCTGTTCCTTCATGTCATCA
GATGTCTTTTTCAGCCACATGGCATGCAACAGGGGGCTGGAGAGATGACT
TCATGGTCTAAGAGTACTTTCTGCCCTTGTAGAGGACCCAAGTTCAACTC
CTAGCACCCATGAGGAAGGTGATTAAAGAAGTCACTGAACTTTGACCTTT
TTTTTTTTTTTTTTTTACTAGAGTCTTTTTTTTTTTTTTAAGATTTATTT
ATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGAG
TCAGTTCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTT
GAACTCCGGACCTTTGGAAGAGCATTCGGGTGCTCTTTACCACTGAGCCA
CCTCGCCCGCCCGAAATTTGACCTTTTTAGAACCCCCACCCGGGCTATGG
AAAAACATAACCATACTCCCTCCCCCACACCCAAAAAAAAAAAAAACCAA
GGAAAGG
CTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAAGTGAAGTTTTGATTTATTATTA
TTGCTTTACCATTTGACAAATCTATAATCAAACACTAGCAAGCATGAACA
AGTTCACCTGTTCTTGGAGGATTAGAAGTACATAAAACCAAACTTAAAAA
CATAGTTTTAACACTTGTAAGTAAACTTGACTGATGTGACATAAGAGCCA
CTGCTTCTGAGAGTCCCCAGCACTTTCTTTCTTGTGTTTTTGGAAAGATC
AACCCAGGACTCAAATTTGTGATTATTCCTTCTACCTCTGACAAGATCTA
GAAGCTGGAAAAGGGGGAAAATTCTTTACAACACTAAAAAGCAAAATGTC
GAAACTATTTTTTGATATCTAAATATGTCTAGGTACTGGTCAAAGCAATG
AGAATAAGTAACTGCTTACACCTCAGCCACAAATGGGTGTCTAGACAATG
TCCTCCAAATGTAGAGAATATTCTGGAAAACAGAATAGAAATCATGTAAG
AGTCAGATAAAGTGTGAGTGGAGCAAAACACTGTCTTTCCAGTGGCATAT
CCCTATTGAGCACGGAAGCTGTGATTACCCGCACAGACCCGGATATAACT
GTGCTCACCCCATCCTATCATGGTGGCACGAAGCTCCTGTCCTTCTTCAA
GACTCTATAGTCTGTAACCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_f13.b1 MSMg01no429_f13.b1 CHROMAT_FILE:
MSMg01no429_f13.b1 PHD_FILE: MSMg01no429_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:48 2005
         (501 letters)



>mm_chr13_64462524_64463424
          Length = 901

 Score =  928 bits (480), Expect = 0.0
 Identities = 489/492 (99%)
 Strand = Plus / Plus

                                                                       
Query: 10  gaattctgctatctgaatcaggtggaattgagcatccttattctgtttctctcaaggagc 69
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattctgctatcagaatcaggtggaattgagcatccttattctgtttctctcaaggagc 269

                                                                       
Query: 70  tttcggactgcaactgcttttttttatcaaatgggaaagatcctcaggggcatcagaggc 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tttcggactgcaactgcttttttttatcaaatgggaaagatcctcaggggcatcagaggc 329

                                                                       
Query: 130 aaggccttaaggattctcaaggttttatttctagtcataaaactgacctgtgccacacca 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aaggccttaaggattctcaaggttttatttctagtcataaaactgacctgtgccacacca 389

                                                                       
Query: 190 tgagcccctcaggatcacacctatctgggagagagtcaggcctttgttggccaatttgta 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgagcccctcaggatcacacctatctgggagagagtcaggcctttgttggccaatttgta 449

                                                                       
Query: 250 aatctgttccttcatgtcatcagatgtctttttcagccacatggcatgcaacagggggct 309
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 450 aatctgttccttcatgtcatcagatgtcaatttcagccacatggcatgcaacagggggct 509

                                                                       
Query: 310 ggagagatgacttcatggtctaagagtactttctgcccttgtagaggacccaagttcaac 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ggagagatgacttcatggtctaagagtactttctgcccttgtagaggacccaagttcaac 569

                                                                       
Query: 370 tcctagcacccatgaggaaggtgattaaagaagtcactgaactttgaccttttttttttt 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tcctagcacccatgaggaaggtgattaaagaagtcactgaactttgaccttttttttttt 629

                                                                       
Query: 430 ttttttttactagagtcttttttttttttttaagatttatttattatatgtaagtacact 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttttttttactagagtcttttttttttttttaagatttatttattatatgtaagtacact 689

                       
Query: 490 gtagctgtcttc 501
           ||||||||||||
Sbjct: 690 gtagctgtcttc 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no429_f13.g1 MSMg01no429_f13.g1 CHROMAT_FILE:
MSMg01no429_f13.g1 PHD_FILE: MSMg01no429_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:48 2005
         (432 letters)



>mm_chr13_64621068_64621899
          Length = 832

 Score =  820 bits (424), Expect = 0.0
 Identities = 430/432 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagtgaagttttgatttattattattgctttaccatttgacaaatctataatcaaacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaagtgaagttttgatttattattattgctttaccatttgacaaatctataatcaaacac 500

                                                                       
Query: 61  tagcaagcatgaacaagttcacctgttcttggaggattagaagtacataaaaccaaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tagcaagcatgaacaagttcacctgttcttggaggattagaagtacataaaaccaaactt 440

                                                                       
Query: 121 aaaaacatagttttaacacttgtaagtaaacttgactgatgtgacataagagccactgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaaaacatagttttaacacttgtaagtaaacttgactgatgtgacataagagccactgct 380

                                                                       
Query: 181 tctgagagtccccagcactttctttcttgtgtttttggaaagatcaacccaggactcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tctgagagtccccagcactttctttcttgtgtttttggaaagatcaacccaggactcaaa 320

                                                                       
Query: 241 tttgtgattattccttctacctctgacaagatctagaagctggaaaagggggaaaattct 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttgtgagcattccttctacctctgacaagatctagaagctggaaaagggggaaaattct 260

                                                                       
Query: 301 ttacaacactaaaaagcaaaatgtcgaaactattttttgatatctaaatatgtctaggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttacaacactaaaaagcaaaatgtcgaaactattttttgatatctaaatatgtctaggta 200

                                                                       
Query: 361 ctggtcaaagcaatgagaataagtaactgcttacacctcagccacaaatgggtgtctaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ctggtcaaagcaatgagaataagtaactgcttacacctcagccacaaatgggtgtctaga 140

                       
Query: 421 caatgtcctcca 432
           ||||||||||||
Sbjct: 139 caatgtcctcca 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)