BAC Information

Click to search

BAC

Clone NameMSMg01-429M15
Chromosome13 (Build37)
Map Location 20,654,577 - 20,655,111
singlet/doubletsinglet
Overlap geneElmo1
Upstream geneEpdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneLOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429M15.T7 (MSMg01no429_m15.b1)MSMg01-429M15.TJ (MSMg01no429_m15.g1)
ACCAG522435AG522436
length732730
length of high quality
(start - end)
535 (59 - 593)440 (68 - 507)
definitionCHROMAT_FILE: MSMg01no429_m15.b1 PHD_FILE: MSMg01no429_m15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:23 2005CHROMAT_FILE: MSMg01no429_m15.g1 PHD_FILE: MSMg01no429_m15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGT
CTTTACCACATTTAGCTGTTGATTATGCTTCATGGCATGAAATATTTAGA
ATTTCAAAATTTGTCAAGCATCCCAAATTGACAATTATGCCTGAGTATAA
AAGCAGATGCAGTTGAAGTTCAGCTGGAAAGTGTCCTGTCTTGTTACACT
TGGAGCATGGAATGAAGCTTAGGTAGTCGTTTCTGATTTAGTTGTAGCCC
CGGTTCAGAGCTGCTAATGAGTGGAAGTGTTGTAGGCTATTTGTCTGAGT
ATACACCATTGGAACCCCCATTGTTCCTCTAAAGATGACATCAAACGTCT
CTTGAATACAATGTCTCCCATCTGTCAGGAGTGTGTCACCATTGGTTCTC
TCCACACTTCTGTTGTGATCTTGGGCCTTATTTCCATCTCATTAGACCGT
TAGCTCACAGAAGGCAGAGTCTGTATCTGCTTCATATCTCTTCCACATAA
AGTCAATATTATAGCCATCATACTTGGTCCCTGAGAATGCTTCTAGATGT
ATGTTAGGCAAGTTATCAATCTTCCCTCAGTTCCTTTATGTGTACAATAC
TCCTATCCTGTTCCTCTCTATTAGAGAGGGGATTAAATGAGATGATGCCC
TACCGAGTGCTGGCTTCTGCTGGGAGCCCCCCTCCCATTTGGCCATACCA
GAAGGCGCTGAAACCCCCGCTCTAATCGCAAA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAATGGGT
GTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGG
TTTTTCTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCG
TATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGAT
GGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTG
AGGATTTTTGTATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTAT
CTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCAT
AAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTTG
TGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGGTAGAACTCTGCACT
AAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAACAACTG
CTTCCATTTCTTTAAGGGGTATGCGACTGTTTAAATGGTCTACCTGAATC
TGAACCACCTTTGTGCCCTGGTATCTCCTCCAATTTTTTTCCTTTTCTCC
CCGCCTTTCTGTTCCGTGTGACCACCCCCCTTTTTACAAACATCTCCTTG
TTTTTCTTTCTTTTCTTTTCCCCCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_m15.b1 MSMg01no429_m15.b1 CHROMAT_FILE:
MSMg01no429_m15.b1 PHD_FILE: MSMg01no429_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:23 2005
         (535 letters)



>mm_chr13_20654377_20655311
          Length = 935

 Score =  973 bits (503), Expect = 0.0
 Identities = 527/535 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttagctgttgattatgcttcatggcatgaaatatttagaatttcaaaatttgtcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttagctgttgattatgcttcatggcatgaaatatttagaatttcaaaatttgtcaag 260

                                                                       
Query: 61  catcccaaattgacaattatgcctgagtataaaagcagatgcagttgaagttcagctgga 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 catcccaaattgacaattatgcctgagtataaaaacagatgcagttgaagttcagctgga 320

                                                                       
Query: 121 aagtgtcctgtcttgttacacttggagcatggaatgaagcttaggtagtcgtttctgatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgtcctgtcttgttacacttggagcatggaatgaagcttaggtagtcgtttctgatt 380

                                                                       
Query: 181 tagttgtagccccggttcagagctgctaatgagtggaagtgttgtaggctatttgtctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagttgtagccccggttcagagctgctaatgagtggaagtgttgtaggctatttgtctga 440

                                                                       
Query: 241 gtatacaccattggaacccccattgttcctctaaagatgacatcaaacgtctcttgaata 300
           |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 gtatacaccagtggaacccccattgttcctctaaagatgatatcaaacgtctcttgaata 500

                                                                       
Query: 301 caatgtctcccatctgtcaggagtgtgtcaccattggttctctccacacttctgttgtga 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtgtctcccatctgtcaggagtgtgtcaccattggttctctccacacttctgttgtga 560

                                                                       
Query: 361 tcttgggccttatttccatctcattagaccgttagctcacagaaggcagagtctgtatct 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 tcttgggccttatttccatctcattagaccgttagcccacagaaggcagagtctgtatct 620

                                                                       
Query: 421 gcttcatatctcttccacataaagtcaatattatagccatcatacttggtccctgagaat 480
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 gcttcatatctcttcaacataaagtcaatattatagccatcatacttggtccccgagaat 680

                                                                  
Query: 481 gcttctagatgtatgttaggcaagttatcaatcttccctcagttcctttatgtgt 535
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcttctagatttatgttaggcaagttatcaatcttccctcagttcctttatgtgt 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)