BAC Information

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BAC

Clone NameMSMg01-430K10
Chromosome13 (Build37)
Map Location 21,289,257 - 21,289,531
singlet/doubletsinglet
Overlap genenone
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27
Downstream geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430K10.T7 (MSMg01no430_k10.b1)MSMg01-430K10.TJ (MSMg01no430_k10.g1)
ACCAG523094AG523095
length754793
length of high quality
(start - end)
388 (76 - 463)272 (76 - 347)
definitionCHROMAT_FILE: MSMg01no430_k10.b1 PHD_FILE: MSMg01no430_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:36 2005CHROMAT_FILE: MSMg01no430_k10.g1 PHD_FILE: MSMg01no430_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGCACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCCTGTTAACATAAGCCCATGGGTAAAGATATTAACAAG
CATCTATTTACCTAGACCAAAAGAGCATTTTGTTGTTGCATACAAGATGC
ATTTGGGCTAAGTGAATGGCTCATTTCTCGCTTACCATCTAAGTGTGAGA
GTCTGAGCCCAGATCTCTAGTGCCCACCCATAAATCTAGGCATTGCAGTA
CATATCTATAACCCTAGAGCTGCTGGGACAGGAACAGGGGATCCCAGCAA
ATTATTGGCCAGATAATATGGCCAGTATACACACACACACACACACACAC
ACACGCACATGCACACGCACACGTGCGCGCGTTTAAGGCCAGCCTTGGTT
ACATAGTGAACTTGAGACACATCTGGAATCTATAACATCCTATCTTGAAG
TGTCAGTAGGGGTTGGGGTTCACATACCGTTTTAATCCCAGCTCTCAAGA
GGCTGTGACTAAGGCCTATGTATCTCTGTGGTTGTGACGCCATTCTGTTC
CAGACACCTAGTTGTTTGCTATCCTTCCTTTTTTGTTTTTCTATCTTCGT
CTTTCTCGTGTGCCTCTTCCCTTTTTTTTTTTTTTCCCCTCCTTCTTTTC
TGTTGCACTAGCTCTCTTTTTCCTTTTTTCCTTTTTTCTTCCCTTCTCCC
TTTTCTCTTTTTTTTTTTCTTTTCTATTTTTTTTTCTCTTTTCTCTTTCC
CCTT
CTGAGCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCTCCCCTAAGTTGCTTTTGTCA
GTTTTTTTTTTGTTTTTGTTTTTAACCACAGAAACTGTAAGTTAAACTAA
AGCAGGACAATATTGTCACTGTGTTCACACACCTTGAATCTAACCCAGTA
GAGTCAATTTCTCAGCAATAGTCCCACCAGTTTGTGATTTCTCATTATTT
TTCAGAGACCTCATACAGGAGGAAAAGGAGGGATAGGCCAAGGACGAGAG
TTCAGTAACACAATCTCTTTTTTTTATTCCTGGACTGAGCTGTGTATATC
ATACTCATGTTCTCAAGAACATCAGTACAATAGTCTATGTTTTAGCTCAG
TGATGATGCCTTGTTTTGCATGATTACCATTTCTGTTACTGTTATACTAT
TTTTTTCTGTTTTTGACCTTAATATCTTCTTTTCTTATCTTAACATCATA
TTCCTTTTCCTCTCTACTTCTCTATTATTACTTTCTCCATTATATATTTT
TCCCTTTTCCTTTATTTATCCCCCAATTTACCCTCTATTATTTTCTTCTC
TTCTTTCCCCTCCTCTATATTTCTTCCTCTACCCCATCCTCTTCCCTTCC
CCCCTCCCTCCTTTATAATCCAACCCTTTTCTTTCTTTTCGTCCTTAAAT
TATCCCCCTCCTTATCTTAGTCTCCAATACCCCCCATTAATCCCCATTTT
ATATCCTCCCCTATCTCAACTCTAAATCCGCCCACCCTTATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_k10.g1 MSMg01no430_k10.g1 CHROMAT_FILE:
MSMg01no430_k10.g1 PHD_FILE: MSMg01no430_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:36 2005
         (272 letters)



>mm_chr13_21289057_21289734
          Length = 678

 Score =  449 bits (232), Expect = e-130
 Identities = 262/280 (93%), Gaps = 16/280 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctcccctaagttgcttttgtca-----gttttt-tttttgtttttgtttttaaccac 54
           |||||||||||||||||||||||||     |||||| |||||||||||||||||||||||
Sbjct: 475 tttctcccctaagttgcttttgtcagttttgtttttgtttttgtttttgtttttaaccac 416

                                                                       
Query: 55  agaaactgtaagttaaactaaagcaggacaatattgtcactgtgttcacacaccttgaat 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 agaaactgtaagttaaactaaagcaggacaatattgtcactgtgttcacacaccttgaat 356

                                                                       
Query: 115 ctaacccagtagagtcaatttctcagcaatagtcccaccagtttgtgatttctcattatt 174
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 355 ctaacccagtagagtcaatttctcagcaatagttccaccagtttgtgatttctcattatt 296

                                                                       
Query: 175 tttcagagacctcatacaggaggaaaaggagggataggccaaggacgagagttcagtaac 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tttcagagacctcatacaggaggaaaaggagggataggccaaggacgagagttcagtaac 236

                                                   
Query: 235 acaatctc-----ttttttttattcctggactgagctgtg 269
           |||||| |          ||||||||||||||||||||||
Sbjct: 235 acaatcacagcag-----tttattcctggactgagctgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 678
Length adjustment: 9
Effective length of query: 263
Effective length of database: 669
Effective search space:   175947
Effective search space used:   175947
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)