BAC Information

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BAC

Clone NameMSMg01-431B22
Chromosome13 (Build37)
Map Location 9,692,053 - 9,692,530
singlet/doubletsinglet
Overlap geneZmynd11
Upstream geneAdarb2, Wdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c, LOC666986
Downstream geneChrm3, LOC100039604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431B22.T7 (MSMg01no431_b22.b1)MSMg01-431B22.TJ (MSMg01no431_b22.g1)
ACCAG523452AG523453
length790775
length of high quality
(start - end)		487 (30 - 516)475 (62 - 536)
definitionCHROMAT_FILE: MSMg01no431_b22.b1 PHD_FILE: MSMg01no431_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:17 2005CHROMAT_FILE: MSMg01no431_b22.g1 PHD_FILE: MSMg01no431_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCTATACGACTCCTATAGTTAGAGGATCCGCGGAATTCTCAAAAGTT
AAATTCACTTTTCTAATCCAAACTAATTGCAACGCGACTTAGAGGAGAAT
CCTGTTAACATCTTAATTTTAAAATGTTCAATATTGTTAGGGCCTTAATT
CATAGTGAGAATTATGTGTGTCATCCTGCAGATTGGTATCTTTTATGAAA
TATTGTGAAGTAATTTTAGGGCCAACTTCTTTGTTTAGAATATACACATT
TTATGCATTCCACATATGTAACTGTTTAGGCTTTTCGAACTCATGCCTTG
GAGTGGAGCCAATGTGTGCTGTCCATCTCCATCCGTACAATCCTGAATTG
ATTGGTTTTGCCTGTTACTGGGGTCATGGAGAAGACTCAATACCTGTGCA
TCTTTACAGTGTGAAGCGGCTGTGAGGACCCTCCCATGCCCTGCATGATG
GGTTCAATTTCAGCACAAGTTTGCTCTACACCTGAGAACAAAGCATCCCA
CTGTAATTCTCTGNTTAAACAATACTGAGAACTCACATAAGTTATTACTA
NCTACCNGCATGTGTGAATGTGAAACAAAATGGCGCTTCTGTCCCTAAAC
AGTCCCCCCCACATTCATGAATTCAGTTCTGGCTACTGGACAACTGGTGA
TTAACCCCTGTGGGGAAGGGCCAAAAACGAAAACCCCCTGGTTTGCTTTC
CTTTCCCCGAAATTTGGTTGGGCCAAAACCAAACCCTTTTTTTTTTTTCC
CACCCCCCCTCGGTTAGTTTTTCTAAAAAAAATTTTTTTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAGGGGATGAGGCTATGACCCTGAACATTTCTCAAGACTG
GCTGTCTTAGTTAGGGTTTTACTGTTGTGAACAGACACCATGACCAAGGC
AACTCTTATAAGGACAACAGTTAATTGGGGCTGGCTTACAGGTTCAGAGG
TTCAGTTCTTTATTATCAAGACAGGAAGGCATGGTGCAGAAGGAGCTGAG
AGTTCTCCATCTTCATCTGAAGGCTGCTAGCAGAATACTGACTCCCAGGT
AGCTAGGACAAGGTTATTGAAGCCCACACCCACAGTGACACACCTACTCC
AACAAGGCCACACCTCCCAACAGTGCCATTCCCTGGGCTAAGCATATACA
AACCATCACACTGACTTGTAAGGTGAAAAAACCCACAATGATGTCATATG
CAGGAACAGCAAGCGCTGCAGGGAGCTCAGCTCTGACCCAAGCTACTTTG
GCTAGCAAGACTGCACAGTTCTAACTGACCTTGATTCTGATTGGTCCTAA
GTAGAGCTTATCTTTGTCCAATTTCTTAAGATTAACCAACCTCAGAATAT
ACAGAAAATAAACAGGGTATATGGTCAGCATGAACCTGCTCTGAATTATT
TTTCTATGGCAGGGGGTGGGAGGCCCATTTCCCCTACAGTTTGAAATACA
ATGCCCCGTCTGTGGAAAAAAGGGCAACCCCCTTCTTGGGGTAAAAGGGG
TTTTGTTCTCCACATACACTAAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_b22.b1 MSMg01no431_b22.b1 CHROMAT_FILE:
MSMg01no431_b22.b1 PHD_FILE: MSMg01no431_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:17 2005
         (487 letters)



>mm_chr13_9691848_9692734
          Length = 887

 Score =  901 bits (466), Expect = 0.0
 Identities = 475/478 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattctcaaaagttaaattcacttttctaatccaaactaattgcaacgcgacttagag 65
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 206 ggaattctcaaaagttaaattcacttttctaatccaaactaattgcaacgagacttagag 265

                                                                       
Query: 66  gagaatcctgttaacatcttaattttaaaatgttcaatattgttagggccttaattcata 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gagaatcctgttaacatcttaattttaaaatgttcaatattgttagggccttaattcata 325

                                                                       
Query: 126 gtgagaattatgtgtgtcatcctgcagattggtatcttttatgaaatattgtgaagtaat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtgagaattatgtgtgtcatcctgcagattggtatcttttatgaaatattgtgaagtaat 385

                                                                       
Query: 186 tttagggccaacttctttgtttagaatatacacattttatgcattccacatatgtaactg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttagggccaacttctttgtttagaatatacacattttatgcattccacatatgtaactg 445

                                                                       
Query: 246 tttaggcttttcgaactcatgccttggagtggagccaatgtgtgctgtccatctccatcc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tttaggcttttcgaactcatgccttggagtggagccaatgtgtgctgtccatctccatcc 505

                                                                       
Query: 306 gtacaatcctgaattgattggttttgcctgttactggggtcatggagaagactcaatacc 365
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtacaatcctgaattgattggttctgcctgttactggggtcatggagaagactcaatacc 565

                                                                       
Query: 366 tgtgcatctttacagtgtgaagcggctgtgaggaccctcccatgccctgcatgatgggtt 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgtgcatctttacagtgtgaagcggctgtgaggaccctcccatgccctgcatgatgggtt 625

                                                                     
Query: 426 caatttcagcacaagtttgctctacacctgagaacaaagcatcccactgtaattctct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 626 caatttcagcacaagtttgctctacacctgagaacaaagcatcccactgaaattctct 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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