BAC Information

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BAC

Clone NameMSMg01-431O16
Chromosome13 (Build37)
Map Location 119,735,411 - 119,901,796
singlet/doubletdoublet
Overlap geneLOC100041298
Upstream geneHcn1, LOC100041695, LOC674926, Mrps30, LOC668309, LOC100041278, Fgf10
Downstream geneLOC100041757, Nnt, Paip1, LOC100041802, 4833420G17Rik, 3110070M22Rik, EG633640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431O16.T7 (MSMg01no431_o16.b1)MSMg01-431O16.TJ (MSMg01no431_o16.g1)
ACCAG524064AG524065
length786770
length of high quality
(start - end)		480 (44 - 523)449 (64 - 512)
definitionCHROMAT_FILE: MSMg01no431_o16.b1 PHD_FILE: MSMg01no431_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:26 2005CHROMAT_FILE: MSMg01no431_o16.g1 PHD_FILE: MSMg01no431_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,735,411 - 119,735,890)(119,901,348 - 119,901,796)
sequence
GGCCGCTATACGACTCCTATAGTTCGAGAATCCGCGGAATTCAAATCATC
TATCACTTTCAGTCACAATGTATTTAACTTTTCCTAACTCTGGGACCTAA
GGACAAAATCTGCCTATAAGTTAGATTTTATTCAAGATGATATTTAATGT
TACTATAAAGTATCAACATTTACATTTATCTTCCTATTAAAGCTATTGTC
TTCTGTCATGTCAACTTCATAGTTAAGAGGTAACAGTAATATTTTAGTTG
ATACAATAAAAATATGTTTCCTAGAATACATAAGTCTTTTTAGAGTTAAT
CAGGCTATCTGTTATGAATCTTTGCATTTAGATTTTTACCACATTTCAAA
ATTTTATAATTAAATATAAGAAATCTTCATTAAATTTTTCCATAAAATTG
TGATTTAAAAAGTTTTATTTTTAATTTTTTCCTTAAATTGTCTGTTGTGG
AATCCTTTCTGTATCTGTCTATGTATCTGTCCCTTTTTATGTGTCTACTT
CTGTATCTGTCTCAAGAGCATTAACCACTTTCAGAAGCTGTTAANACAGA
AAATGAGGAATGGGACAGATCACTCCGTGGCTTAAAACATTTATATCTTG
GAAAAAGCCTTGAATCCCTTTTCCACCATCAAAGGGGTGGGTTTAAAAAG
GTTCTTTTAAAAAAATTTCCTGGTGCCCCTTTGTCTCCCATAATTTTTTA
ATAATAACCTGATTTCTTCCTGTGTATTATGTCAAACTTCTCAACTCCTT
TATAACAACGTCAAAACTTTCAAAATCTCTCTATCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCATGAATATATTTATTCATTTTTTAAAATGCATACTC
TTAACCTGGGATGGCACTGGATTTGTAGTAAGCATTAAAAAATGATTGTC
AGCTTTAGACATAAAAGAAATTGCTGAAGATATTCCTGTTAGCAGACTAA
CAAAATTGCTGATTCTTGTAAGGAGACTAGTTCCTCTCTTGCAGCACAAA
CTGGAAACCACATTCAAAATGTCAAAAAGATTCTTGTTTATTGTTAAAGA
TTCCAGAAACTATATCTAAGGAAGAGAAATGACTGTGCTTTCTACTTTCA
CTGTATCCTCTTGCCACTCCTTCTTTTCTTTTCTTCTAAACACAAACCTC
TAAACATGGAAAAATGTGTTTTCAACTAGCAAAATAGTAGAAAAAATTTG
TAATATGTATTTTTAGATGTTTTGGTCATAGAGACCTTAACGAGACAGAA
ACATCATTTGCCTGGGGACCAGTGGTTTTTTTTTTTTTTTTAAAGGCTTT
TCTATTTTAAGTTGNACTAAACAGGCCAGTTTGAGTTAATGAGAAAAAAA
AACCCCCACCCACAATTATTTCTTCCTCCCACCCCGGTCCCCTTAGGGGG
ATCTTTATGGATCTTACCCTACTTGGGGTTTTGTCCCGCTCGATTTTTAC
CCCCGTCCTCTCTCGTTTTTCCTCTCTTCCCCCTTTTTCCTAACCTCCCA
TTATCCTTTTCCCTTCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_o16.b1 MSMg01no431_o16.b1 CHROMAT_FILE:
MSMg01no431_o16.b1 PHD_FILE: MSMg01no431_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:26 2005
         (480 letters)



>mm_chr13_119735211_119736090
          Length = 880

 Score =  897 bits (464), Expect = 0.0
 Identities = 476/480 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcatctatcactttcagtcacaatgtatttaacttttcctaactctgggacctaagga 60
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcatcaattactttcagtcacaatgtatttaacttttcctaactctgggacctaagga 260

                                                                       
Query: 61  caaaatctgcctataagttagattttattcaagatgatatttaatgttactataaagtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaatctgcctataagttagattttattcaagatgatatttaatgttactataaagtat 320

                                                                       
Query: 121 caacatttacatttatcttcctattaaagctattgtcttctgtcatgtcaacttcatagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacatttacatttatcttcctattaaagctattgtcttctgtcatgtcaacttcatagt 380

                                                                       
Query: 181 taagaggtaacagtaatattttagttgatacaataaaaatatgtttcctagaatacataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagaggtaacagtaatattttagttgatacaataaaaatatgtttcctagaatacataa 440

                                                                       
Query: 241 gtctttttagagttaatcaggctatctgttatgaatctttgcatttagatttttaccaca 300
           |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 441 gtctttttagagttaatcaggctatctggtaggaatctttgcatttagatttttaccaca 500

                                                                       
Query: 301 tttcaaaattttataattaaatataagaaatcttcattaaatttttccataaaattgtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcaaaattttataattaaatataagaaatcttcattaaatttttccataaaattgtga 560

                                                                       
Query: 361 tttaaaaagttttatttttaattttttccttaaattgtctgttgtggaatcctttctgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaaaaagttttatttttaattttttccttaaattgtctgttgtggaatcctttctgta 620

                                                                       
Query: 421 tctgtctatgtatctgtccctttttatgtgtctacttctgtatctgtctcaagagcatta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgtctatgtatctgtccctttttatgtgtctacttctgtatctgtctcaagagcatta 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no431_o16.g1 MSMg01no431_o16.g1 CHROMAT_FILE:
MSMg01no431_o16.g1 PHD_FILE: MSMg01no431_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:26 2005
         (449 letters)



>mm_chr13_119901148_119901996
          Length = 849

 Score =  861 bits (445), Expect = 0.0
 Identities = 448/449 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaatatatttattcattttttaaaatgcatactcttaacctgggatggcactggatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 catgaatatatttattcattttttaaaatgcatactcttaacctgggatggcactggatt 590

                                                                       
Query: 61  tgtagtaagcattaaaaaatgattgtcagctttagacataaaagaaattgctgaagatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tgtagtaagcattaaaaaatgattgtcagctttagacataaaagaaattgctgaagatat 530

                                                                       
Query: 121 tcctgttagcagactaacaaaattgctgattcttgtaaggagactagttcctctcttgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tcctgttagcagactaacaaaattgctgattcttgtaaggagactagttcctctcttgca 470

                                                                       
Query: 181 gcacaaactggaaaccacattcaaaatgtcaaaaagattcttgtttattgttaaagattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gcacaaactggaaaccacattcaaaatgtcaaaaagattcttgtttattgttaaagattc 410

                                                                       
Query: 241 cagaaactatatctaaggaagagaaatgactgtgctttctactttcactgtatcctcttg 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cagaaactagatctaaggaagagaaatgactgtgctttctactttcactgtatcctcttg 350

                                                                       
Query: 301 ccactccttcttttcttttcttctaaacacaaacctctaaacatggaaaaatgtgttttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ccactccttcttttcttttcttctaaacacaaacctctaaacatggaaaaatgtgttttc 290

                                                                       
Query: 361 aactagcaaaatagtagaaaaaatttgtaatatgtatttttagatgttttggtcatagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aactagcaaaatagtagaaaaaatttgtaatatgtatttttagatgttttggtcatagag 230

                                        
Query: 421 accttaacgagacagaaacatcatttgcc 449
           |||||||||||||||||||||||||||||
Sbjct: 229 accttaacgagacagaaacatcatttgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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