BAC Information

Click to search

BAC

Clone NameMSMg01-432A02
Chromosome13 (Build37)
Map Location 65,386,179 - 65,386,658
singlet/doubletsinglet
Overlap geneZfp369
Upstream gene1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847
Downstream geneLOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432A02.T7 (MSMg01no432_a02.b1)MSMg01-432A02.TJ (MSMg01no432_a02.g1)
ACCAG524130AG524131
length770768
length of high quality
(start - end)
521 (42 - 562)228 (74 - 301)
definitionCHROMAT_FILE: MSMg01no432_a02.b1 PHD_FILE: MSMg01no432_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:34 2005CHROMAT_FILE: MSMg01no432_a02.g1 PHD_FILE: MSMg01no432_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:34 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATATCCTTATTTCATTAATAGGTTGGAGGCCAGCCTTTACTACCTAATA
CCTTATCTCAAAACAAAACAAAACCCCCAACACAAACCCCACCACCACTA
TACACAAACCCCAAATACCATACCCCGCCCCCCCAAATAAAGACTGACGC
TGGGGATATTAGTTCAAGTAGCATGTCTGCTTTGCTTGTCATGTGAAAGG
CCCTGGGCTTAATCACTAGCATCATGAAAAAATGACTGCAGACTGGAAAA
TAACTTATACTTACTACAACAAGCTACCTGGGTTCTCATACTGCTTAGAA
GACATTAGTCTTAGAATAACCAGAAGATTCATCCCTTTTGGAAACTCCTA
TATGCCTGGCTCTTACCTGGAAGAGTATCTTGAGGAATTTCTCTCTGCAT
TGGCCAGCAGTCTTCTACTTCTTCTAACTGAGGCATCACATTTGCCTTGG
AAAAGTGATGCTCTGCTCGATGGATGGAAAAGAGACAGGGCTTGGAGGTC
TGCTTAAAGAAAAAGCTGTCCCGCTGTCACATTCTATTCCCTCCTTCCCC
CAGGTGGGACATGAAGATTTTCAGGCTTGGGTATTTGACACTACATGTCC
CTTCCTTTTTTCTGAACTTATGGGATTTCTCTGATACCCATTTGCCTTAA
TTTAATAATAGCATCCTGTCCCATTTGCTATCATTCCATGTTAACTCTCT
CCACCTATTTCTTACTTTTT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGAATGGAAGAGAATCACTTAAAGAA
ATGTTCAACATACTTAGCTATCAGGGTAATGAAAATCAAAACAACCCTGA
GATTCCGCCTTATACCAATCAGAATGGCTAAGATAAAAAACTTAGGTGAC
AGCAGATGCTGATGAGGATATGAAGAAAGGGCAACACTCCCCCACTGCTG
GTGGGGTTGCAAGCTGATAAACCACTTTGGAAATAATATGTATTTCAATA
AAATGTTAGAAAATGTGAAGGCAAATATCAAACTACATAAGAGTTGTTTG
GGTTTTTATTCTAATTTCACTCTAAATGACATTAGCTTTTTTATGTTTCA
AGCTCTTAATTTTCATTTATATAATTTTAAAATCATGGCACTTGTAGGAA
TTTTCATATATGCAACTATTTTATTGTCTGTTACCCTCGCTTTCATATGA
TATGTTTTCCGAACCTATTACGTGTCTCGTGTTTCTTTTCCCTCTTTCTA
CCTTCTTTTTAGTCCCACTCTCCCCTTTTTCTTCTCCGTTTTTTTTCCTC
CTTACCCTCCCGCCCTCCTTTCATCTCTTATCCTTTTTCTTATCGTTTTA
CCCTTATCTTCGTTCCCCTTCCTTGTTCCTACTACAAAATTCTTTTCTCC
TCTCTCTTTCCTTATTTTTCTTCTATATTCCTGTCCCGTTTAATTTACCA
CGTGCTTACCTTCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_a02.b1 MSMg01no432_a02.b1 CHROMAT_FILE:
MSMg01no432_a02.b1 PHD_FILE: MSMg01no432_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:34 2005
         (521 letters)



>mm_chr13_65385738_65386658
          Length = 921

 Score =  920 bits (476), Expect = 0.0
 Identities = 479/480 (99%)
 Strand = Plus / Minus

                                                                       
Query: 42  agcctttactacctaataccttatctcaaaacaaaacaaaacccccaacacaaaccccac 101
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 agcctttactacctaataccttatctcaaaacaaaacaaaacccccaacacaaaccccac 862

                                                                       
Query: 102 caccactatacacaaaccccaaataccataccccgcccccccaaataaagactgacgctg 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 caccactatacacaaaccccaaataccataccccgcccccccaaataaagactgacgctg 802

                                                                       
Query: 162 gggatattagttcaagtagcatgtctgctttgcttgtcatgtgaaaggccctgggcttaa 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gggatattagttcaagtagcatgtctgctttgcttgtcatgtgaaaggccctgggcttaa 742

                                                                       
Query: 222 tcactagcatcatgaaaaaatgactgcagactggaaaataacttatacttactacaacaa 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcactagcatcatgaaaaaatgactgcagactggaaaataacttatacttactacaacaa 682

                                                                       
Query: 282 gctacctgggttctcatactgcttagaagacattagtcttagaataaccagaagattcat 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctacctgggttctcatactgcttagaagacattagtcttagaataaccagaagattcat 622

                                                                       
Query: 342 cccttttggaaactcctatatgcctggctcttacctggaagagtatcttgaggaatttct 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccttttggaaactcctatatgcctggctcttacctggaagagtatcttgaggaatttct 562

                                                                       
Query: 402 ctctgcattggccagcagtcttctacttcttctaactgaggcatcacatttgccttggaa 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctgcattggccagcagtcttctacttcttctaactgaggcatcacatttgccttggaa 502

                                                                       
Query: 462 aagtgatgctctgctcgatggatggaaaagagacagggcttggaggtctgcttaaagaaa 521
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 aagtgatgctctgctcgatggatggaaaagagacagggcttggaggtctgcttagagaaa 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)