BAC Information

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BAC

Clone NameMSMg01-432J01
Chromosome13 (Build37)
Map Location 108,912,922 - 108,913,410
singlet/doubletsinglet
Overlap geneNdufa12l
Upstream geneLOC100040350, LOC100040366, Apoo, AI197445, LOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik
Downstream geneErcc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, Pde4d, EG668144, LOC621663, LOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432J01.T7 (MSMg01no432_j01.b1)MSMg01-432J01.TJ (MSMg01no432_j01.g1)
ACCAG524553AG524554
length875765
length of high quality
(start - end)
129 (66 - 194)489 (74 - 562)
definitionCHROMAT_FILE: MSMg01no432_j01.b1 PHD_FILE: MSMg01no432_j01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:20 2005CHROMAT_FILE: MSMg01no432_j01.g1 PHD_FILE: MSMg01no432_j01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGTTGCTTTACTACTCACTATTTTTCGAGGATCCGCGGAATTCAA
TCCCCAGTAACTACAAACAAACAATAAATATGGAGAGAAAGTGTCTCCCT
ACACCTAATCTTAGGTTGTCAAGCCTATTTCCAGTTCAGAGAGAGGAAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTTNTTT
TTGTTTTTTTTCCCTTTTTTTTTCTTTTCTTTTTCTTTTTTTTTTGTCTT
TTCTCTTTCGCTTTTTTCGTTTTTTCCCTTCTTGTTTTTCGCTTTTCCGC
TTTCTGCGTTTTTGTTCCTCTCCGCGTGCTTTTGTCGCTGTCCTTTTTTC
CTCTTTTCTGTCGTTGTTTCCTTTTTTTTTTTTTCCTTTTCTTCTTTCCT
GTTTTTTCTTTTTTCTTTTTTTCTTTTTTTCCGTTTTCTTCTCTTTATTT
TTTGTTGTTTCTTCTCTTTTTCTCCTTCTTTTCCCTTTTTTTCTGTGCTC
TTCTCTCTTTTTTCTCCTTTTTTCTTTTCACTTTTGCCTTCTCTTTTGCT
TTCGTTTTCCCTCCTTTTTTCTCTCTTCTCCTTTTTTTTCTTCTTTTTTC
TTTCTTCTTTTTTTTTCCCTTTTACTTGTTTTTTTCTCTCTCTTTTTTTT
TCTTTCTGCTTTGTTTCCTTTTATTTCTTTGTCCCCCTTCCTTTCTTCCT
CTTTCCTTTTCTCTTTTCTGTCTTTCTTTTTTTTCTTTATTTTTTTTCTT
TTCTCTGTGTGTTTATATTCATTTTATTCTTCTTTTCTTATTTCCTTACC
TACCCCCTTTCTTTTATTTTATCTGCCTTCTCCTTTTTCTTCTTTCTTCT
CCTCCTTCCCTTCTCCTCTTTGTTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATATTTCCATAAAGGCCATCAACAGTA
GAAGCCTGCAGGGAAAGAGGGGGAGACATGACAAAAACCTGTGAGGCCAG
CATTTTCCTCGATGTTCCAGCCGCAAATTACTGGTAATAAGGGTTTACAC
TGACCGGGATTAAAGAAAAATATAGACAGCCAGGAGGGAAAGACTCCTCA
GCCTAATTGATTTTAACTAAATATGTCTACATTTGATAACTAAATATGTG
TTTATTCATCTATAGAAAACCTAATATATACTTAAAAGTCAGTCTTCACT
ATTTAAACAGCAAAAATAAGGCAGTTGTTAAAGCTACAGAACTCCATCAC
ACAGGGTCTCTTCGTAAGAGCCTTCAGAGATTTGAACATTCATTCAGAAC
AGCCGGAACATTCTGGGATAGTTGATTGCTGTTCTCAGGTGAATTGCAGG
TTACGTGCAAGCCCATGAAATCGTTATTCCAATCCCATAGAAAACTAGCT
TGCCTTTTGTCTCCGCAATATCGTCATTTTATAAGGGGTTCATGGAAAAG
CCTGTATAATACCGTGTTCTTTAATTAATCGACTGTATTCTTGCTTATGT
TACACAATTGGTCCCCCAATTTTCCCGCCCGGTTTTCCTTCTTTCTCCCA
TTTTTCTAACTACTTATCTTTGCTATCATACTATTCCCTCCCGCATTTAT
TTTTACCCCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_j01.g1 MSMg01no432_j01.g1 CHROMAT_FILE:
MSMg01no432_j01.g1 PHD_FILE: MSMg01no432_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:20 2005
         (489 letters)



>mm_chr13_108912722_108913610
          Length = 889

 Score =  899 bits (465), Expect = 0.0
 Identities = 483/489 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatttccataaaggccatcaacagtagaagcctgcagggaaagagggggagacatgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 atatttccataaaggccatcaacagtagaagcctgcagggaaagagggggagacatgaca 630

                                                                       
Query: 61  aaaacctgtgaggccagcattttcctcgatgttccagccgcaaattactggtaataaggg 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 629 aaaacctgtgaggccagcattttcctcgacgttccagccgcaaattactggtaataaggg 570

                                                                       
Query: 121 tttacactgaccgggattaaagaaaaatatagacagccaggagggaaagactcctcagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tttacactgaccgggattaaagaaaaatatagacagccaggagggaaagactcctcagcc 510

                                                                       
Query: 181 taattgattttaactaaatatgtctacatttgataactaaatatgtgtttattcatctat 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 509 taattgattttaactaaatatgtctacatttgatatctaaatatgtgtttattcatctat 450

                                                                       
Query: 241 agaaaacctaatatatacttaaaagtcagtcttcactatttaaacagcaaaaataaggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agaaaacctaatatatacttaaaagtcagtcttcactatttaaacagcaaaaataaggca 390

                                                                       
Query: 301 gttgttaaagctacagaactccatcacacagggtctcttcgtaagagccttcagagattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gttgttaaagctacagaactccatcacacagggtctcttcgtaagagccttcagagattt 330

                                                                       
Query: 361 gaacattcattcagaacagccggaacattctgggatagttgattgctgttctcaggtgaa 420
           ||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 329 gaacactcattcagaacagccagaacattctggggtagttgattgctgttctcaggtgaa 270

                                                                       
Query: 421 ttgcaggttacgtgcaagcccatgaaatcgttattccaatcccatagaaaactagcttgc 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 269 ttgcaggttacgtgcaagcccatgaaatcgttattccaatcccatagaaaacaagcttgc 210

                    
Query: 481 cttttgtct 489
           |||||||||
Sbjct: 209 cttttgtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)