BAC Information

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BAC

Clone NameMSMg01-432L22
Chromosome13 (Build37)
Map Location 15,593,998 - 15,594,382
singlet/doubletsinglet
Overlap geneGli3
Upstream geneHecw1, Mrpl32, Psma2, AW209491, EG665099, LOC670994, EG625121
Downstream geneLOC665157, Inhba, LOC625181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432L22.T7 (MSMg01no432_l22.b1)MSMg01-432L22.TJ (MSMg01no432_l22.g1)
ACCAG524690AG524691
length787829
length of high quality
(start - end)
393 (44 - 436)34 (74 - 107)
definitionCHROMAT_FILE: MSMg01no432_l22.b1 PHD_FILE: MSMg01no432_l22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:35 2005CHROMAT_FILE: MSMg01no432_l22.g1 PHD_FILE: MSMg01no432_l22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTCTGAGATTACATACCACACTAACGTCTCTAGCAAATTCCTTTGC
AAAAACAGTGGGGTTTTCTTACTGTTTTTGTTTCTTGTCCCACCTATCTG
CTGTCAGTTTCAAGGGGCCCAGGCCTTTCCACTGGGCTCCTCAGACCTCA
TCTCTTTTTCCAGTTACCACCAACATTTCCAACTCAGTTCAATAAGAAAT
AGCTATTCAACAAATTTGGGTTGCTGTCTCCCACAACAGGACTCCGTATC
AGCATTCCGCACCAAGGCTCACAATCGGAATGCTAAAACTCAAAGTGTCC
CCTGTTTTGGTATCTCTCGTAAATGATTGGGCTACCAGTTGCTCCAGATG
GCATGTCTCTAGAAGTCTAAGCAAAGTTAAACACAAAATTAGTGGACTTG
GGTAAACCGAAATGTCCTCCCTTACCCAACTAATGTCAGTACATAAATAA
GGGAGAAGAACCCCAGGATGTTTGCAAACCACCTGGTTCCATTTACTGAA
TCAAAACTAATGTTTGTGGACAGTCCTAATCTTATGAAAGGGTTTTTTAG
GTTCTCCAGTGGATGATAAACCTACCCTTATATTTTCTCCCAACAAAGGG
GGCCATATTGGTGCAATTTTTTTTCACGGTCTTCTGCTCTAACCATCTTA
ATAATAATCCTCCCTGACCACCGCTAGATCTCTTTATTATTTCCATTTTA
TCTTCCCCCCCTTTAATTTATATTTCTTTCCAACACG
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCAGGGCAGGGAGGTGGGAGTGTGTGTGT
GTGTGTGTNTNTNCCCCTNCCCCCCTCTTCTCTCTTTCTCCCCCCCCCCC
CTTCCCCTCTTTTTCGTTTCCGTTTGCCCTTCTTTCTCTTTTTTCCCCCT
CTTTCCTCCNCCCCTCCNNCTCTCCCCTCCCCCTTTCTGCTCCCCCTCCT
CCTCCCTTTCCTTCGTCCCTCTCCTCGCTCCCCGCTCTCCTCCCCCCTCC
CCTCCTTTTCCTCCTCCTTCCCTTTTTTCTTTTTCCCTTCTTCCCTTCCT
CTTCCTTCCTTTTCTTTCTCCCTCCTTTCCTTTCCTTCCTTCCCCTCTCT
TCTTTTCTTTCGCCCTTCCCCCCCCTTCCTTCTCTTTTCTTCTCCTCTTT
CTCTTCCTTTCTTCTTTTTCTTTTCCTCCCTTTCCCTTTTCTCCTTCCTT
TTTCTTCTTCTTTTCTTCTCCCATCCTTTCCCCTCCCTTCTCCCCTTTTC
TTCTCTCTTCCTTCTTCTTTCTTCCCCTTTCTTTCCTTCCTTTTCCCCTC
CTTCTCTTCCCTCTCCCCTTCCTTCCTTTTTCCCTCTCTCTCTTTTTTCT
TCCTCTCCCCTCTTTTCCCCTCTTTTTTTCCATCTTTCTCCCTCCTTCCT
TTTTTTCTACTTCTTTTCCTTCCCTTCTCTCTTTCCCTCCCTCCCCCTCC
TTCCTCTTTTCTTCCTTCCTCTTCTCCCTTATTCCTCCTCCTCTTTCTTT
CTTTTCCCCCCTTTCTCTCCCTTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_l22.b1 MSMg01no432_l22.b1 CHROMAT_FILE:
MSMg01no432_l22.b1 PHD_FILE: MSMg01no432_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:35 2005
         (393 letters)



>mm_chr13_15593790_15594582
          Length = 793

 Score =  700 bits (362), Expect = 0.0
 Identities = 380/386 (98%), Gaps = 2/386 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcagtctgagattacataccacactaacgtctctagcaaattcctttgcaaaaacagtgg 68
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tcagtctgagaagacataccacactaacgtctctagcaaattcctttgcaaaaacagtgg 534

                                                                       
Query: 69  ggttttcttactgtttttgtttcttgtcccacctatctgctgtcagtttcaaggggccca 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ggttttcttactgtttttgtttcttgtcccacctatctgctgtcagtttcaaggggccca 474

                                                                       
Query: 129 ggcctttccactgggctcctcagacctcatctctttttccagttaccaccaacatttcca 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ggcctttccactgggctcctcagacctcatctctttttccagttaccaccaacatttcca 414

                                                                       
Query: 189 actcagttcaataagaaatagctattcaacaaatttgggttgctgtctcccacaacagga 248
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 413 actcagttcaataagaaatagctattcaacaaatgtgggttgctgtctcccacaac-gga 355

                                                                       
Query: 249 ctccgtatcagcattcc-gcaccaaggctcacaatcggaatgctaaaactcaaagtgtcc 307
           ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctctgtatcagcattcctgcaccaaggctcacaatcggaatgctaaaactcaaagtgtcc 295

                                                                       
Query: 308 cctgttttggtatctctcgtaaatgattgggctaccagttgctccagatggcatgtctct 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cctgttttggtatctctcgtaaatgattgggctaccagttgctccagatggcatgtctct 235

                                     
Query: 368 agaagtctaagcaaagttaaacacaa 393
           ||||||||||||||||||||||||||
Sbjct: 234 agaagtctaagcaaagttaaacacaa 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)