BAC Information

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BAC

Clone NameMSMg01-434O22
Chromosome13 (Build37)
Map Location 57,471,392 - 57,637,536
singlet/doubletdoublet
Overlap geneSpock1
Upstream geneLOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7, LOC100040995
Downstream geneKlhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1, LOC100041086
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434O22.T7 (MSMg01no434_o22.b1)MSMg01-434O22.TJ (MSMg01no434_o22.g1)
ACCAG526354AG526355
length869762
length of high quality
(start - end)		143 (37 - 179)105 (69 - 173)
definitionCHROMAT_FILE: MSMg01no434_o22.b1 PHD_FILE: MSMg01no434_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:29 2005CHROMAT_FILE: MSMg01no434_o22.g1 PHD_FILE: MSMg01no434_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,637,408 - 57,637,536)(57,471,392 - 57,471,496)
sequence
TGCGGCCGCTAAACGACTACTATAGTTCGAGAATACGCGGAATTCCTTGA
CTATTATCACACCTTGTATTGAAAATGGGCAGCAGGGATTTATTTCTTAC
AAAGTCAAAATGTGAAACCATAAAGCCTTTCAGCCCAAGGTTTCACAGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTNCNAANCTCCACAAAATAAAA
TTTATATAAATATAATATTTATAAATTAATAAATCCGAAAAACGTTTTTT
TATACTTTATAAAAATAATATTAATAACACAAAAAGATCTATATAACAAA
GACGAAAAATTTTTTTTTATAAATAACAGAATAACTTTAACTTTAATATT
TTTTTTCCTCAAATATTTATTTTAATTAGATATATATTTATTATTTATTT
ATTTATATAACCTAACTACATTCTATTAAATTAATTTATTTAAATTATTT
TTATATATTTTATTATACTACTATTTAATAACATAAATATCCATTATATA
ACTATTTCTTTAATTTAAATATTTAGTATCTTATTTTATATTATCACTAC
ATCTTCAATTTATAATAAATCAATATTTTAATACTACCATTACATACATT
ACATACCTATATTTACTTACTTTTCAATTTTATCAATCTCTAATTCTCTT
ATTACATTAATAATCATAATTTAACTCATATACTAATAATACTCATCTTA
TCCTTAAAAATATACAATTCATTTTAAATATTTATTACTTATATATCTAT
TCACATATACCATACCCAAATAATTCATTATATAAATATTCTATATATTC
TTTAATTATTTTCTTATTATATATTTTTATCCTTTACTTATATCAACATT
ATTATCATGTTTTATTTTG

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCGCATTCTTAGAAGGATTTTGAAGCCAGGTAGTGAGAGAA
CATGGATTGGCCCTTTCTCTAGTGCCTGATTTTATTGAGGGGAATTATAG
AAGGAAGTGTGTGTGTGTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTTTTTNTNNNNNNNNTNNTTTTTTTTTTTTTTTTTTTTTTTTTNTTTNN
NNTTTNNNNNTNTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNN
NTTTTTTCCCCCCCCCTNCCCCCCCCCCCCCCCCCCCCCCTCTTCCCTCT
TCCCCCCCCCCCCCCCCCCCCCCCTCCTCCCTNTCCCCTCTCCCCTCCCC
CCCTCCCCCCCCCCTTCCCCCCCCCCCCCCCCCCCCCCCCCTCTCCTCTT
CCCCCCCCCCCTTCCCCTCCCCCCCCCCCCCCCCCCTCCCCCCCCCTCCT
CCCCCCCCCCCCTCTCCCCCCTCTCTCTCCCTTCCCCCCCCCCCCCCCCT
CCCTCCCCCCCCCCCCCCTCCCTCCCCCCCCCCCTCCCCTTCCCCCCCCT
CCTTCCCTCCCTTCTCTTCCCTCCTCCCCTCCCCTTCCCCTCCCTCTCCC
TCCCTCCCCCTCCCCTTCCTTCTTCCTTCTTTCCCCTTTTCCCCCTCCTC
TCCCCTCTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_o22.b1 MSMg01no434_o22.b1 CHROMAT_FILE:
MSMg01no434_o22.b1 PHD_FILE: MSMg01no434_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:29 2005
         (143 letters)



>mm_chr13_57637226_57637768
          Length = 543

 Score =  226 bits (117), Expect = 4e-64
 Identities = 126/129 (97%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattccttgactattatcacaccttgtattgaaaatgggcagcagggatttatttctt 62
           |||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ggaattccttgactataagaacaccttgtattgaaaatgggcagcagggatttatttctt 252

                                                                       
Query: 63  acaaagtcaaaatgtgaaaccataaagcctttcagcccaaggtttcacagtgtgtgtgtg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 acaaagtcaaaatgtgaaaccataaagcctttcagcccaaggtttcacagtgtgtgtgtg 192

                    
Query: 123 tgtgtgtgt 131
           |||||||||
Sbjct: 191 tgtgtgtgt 183


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no434_o22.g1 MSMg01no434_o22.g1 CHROMAT_FILE:
MSMg01no434_o22.g1 PHD_FILE: MSMg01no434_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:29 2005
         (105 letters)



>mm_chr13_57471192_57471696
          Length = 505

 Score =  203 bits (105), Expect = 2e-57
 Identities = 105/105 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaaggattttgaagccaggtagtgagagaacatggattggccctttctctagtgcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaaggattttgaagccaggtagtgagagaacatggattggccctttctctagtgcctg 260

                                                        
Query: 61  attttattgaggggaattatagaaggaagtgtgtgtgtgtgtgtg 105
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttattgaggggaattatagaaggaagtgtgtgtgtgtgtgtg 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 505
Length adjustment: 8
Effective length of query: 97
Effective length of database: 497
Effective search space:    48209
Effective search space used:    48209
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)


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