BAC Information

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BAC

Clone NameMSMg01-435G04
Chromosome13 (Build37)
Map Location 67,575,816 - 67,576,227
singlet/doubletsinglet
Overlap gene9630025I21Rik
Upstream geneC330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098
Downstream geneZfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435G04.T7 (MSMg01no435_g04.b1)MSMg01-435G04.TJ (MSMg01no435_g04.g1)
ACCAG526702AG526703
length786754
length of high quality
(start - end)
359 (69 - 427)412 (76 - 487)
definitionCHROMAT_FILE: MSMg01no435_g04.b1 PHD_FILE: MSMg01no435_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:06 2005CHROMAT_FILE: MSMg01no435_g04.g1 PHD_FILE: MSMg01no435_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:06 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCTGTTTACAATCCTTACAGGTGTGAAGAATGTGGGAAAGCCT
TTTCCTATCCCTCAACCCTAAAGCAGCATCAAAGAATTCATTCTCGGAGA
GAAACCATACCGTTGTGAAGAATGTGGCAAAGCCTTCCGTAGGTCAACAT
ACTTTCACCAACACCAAAGAATTCATACTGGAGAGAAACCCTACCAGTGT
GAAGAGTGTGGGAAAACATTCTACTATCGTTCAAACCTGAAGGGACATCA
GATTATTCATTCTGGAGTGAAATCCTACAAGTGTGAAGTATGTGGGAGCA
TGTTTAGAACTAGCTCAGACCTTTCTAAGCACCAGAGGATCCATGCGGAA
GTGAAGCTGTACAGTTGTGAGGAGTGCGGGAAAGCCTTTTCTACTCATTC
GTACCTCATTCGGCATAAATTGGGCCACTCTAGATAGAAACCATACATAT
GTGAATAGTGTGGTCTAACATTTCGTCATCCTCCAATCTTCAAGGAACCT
TCCCCTATCTTTCCTGGAGTGTTACCTTACTATTTGTGATTTCATCGCGC
TCCATGCTTCACTATTCTCTTTCCTTATTTTTTATTCCCTTCTATACATT
CTCGCTTGTTTCCTCATTTTTTCTTTCCTTTCTGCCCCCATTCGAGAATA
TTTCTTTTTCCCCTTCTTTCTCTTCTCCCTCTACCTCCCCACTTTCTGCG
CTTTATTCCTTCTTACTTTCCTCTTTTATTACCTTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGGCATTGCATACTTAGAGAGCT
GTGATCAATGGCCTCATTGTGATTGTTAAATTCATTGCCTGTTGTTCCTG
TTGAGCAAGAGTTCACATATGAACAAAATGTGAGAAGTATTCATCATACT
TAGGATGCTTATCTTTAAAATAGTGACCTTTACTCACATATATTTAACCA
TAAATGAAAATCTAATTTGGTGTAGGCACTAAATATAAGTCAAAAATATA
GTATATAGTAGCTGATCTGATCTATCCTTCTAGTGGAATAAGTGTAGAAC
CAAATGAAACATAGACATAATGTCATATTTTTCAAAATTAAATAGCTAAG
TAAGTTGTCAGGTCATTTTAGTAACAGCAATAAGCCTACTAAACAATACA
AATATGATATAGCTGGACACCCATGACAGTATCAAGTAGTGTAGCCTGGA
AAAGAGAAAGCCGATTGTGATTGTGAGATTGGGCCATCTTCCAAATAAAA
TCAAGATTTATTATATATTTAAATCCTCATTATTGAAATAGGCCACCGCA
AAATTTATAACATACTTTTATACTCCCCCCGCAATTTGCCCACCAGACAC
TCTTATTCAAATTTGGGAGCAGTGTACCGCGCCTTACCTTTTATATTTGT
TTGAGTTACACTTTCCCCCTATCCTCCCTCTTTATTCCCAATAACCCTAT
TATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_g04.g1 MSMg01no435_g04.g1 CHROMAT_FILE:
MSMg01no435_g04.g1 PHD_FILE: MSMg01no435_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:06 2005
         (412 letters)



>mm_chr13_67575616_67576427
          Length = 812

 Score =  789 bits (408), Expect = 0.0
 Identities = 411/412 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggcattgcatacttagagagctgtgatcaatggcctcattgtgattgttaaattcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggcattgcatacttagagagctgtgatcaatggcctcattgtgattgttaaattcat 260

                                                                       
Query: 61  tgcctgttgttcctgttgagcaagagttcacatatgaacaaaatgtgagaagtattcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcctgttgttcctgttgagcaagagttcacatatgaacaaaatgtgagaagtattcatc 320

                                                                       
Query: 121 atacttaggatgcttatctttaaaatagtgacctttactcacatatatttaaccataaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacttaggatgcttatctttaaaatagtgacctttactcacatatatttaaccataaat 380

                                                                       
Query: 181 gaaaatctaatttggtgtaggcactaaatataagtcaaaaatatagtatatagtagctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaatctaatttggtgtaggcactaaatataagtcaaaaatatagtatatagtagctga 440

                                                                       
Query: 241 tctgatctatccttctagtggaataagtgtagaaccaaatgaaacatagacataatgtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgatctatccttctagtggaataagtgtagaaccaaatgaaacatagacataatgtca 500

                                                                       
Query: 301 tatttttcaaaattaaatagctaagtaagttgtcaggtcattttagtaacagcaataagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatttttcaaaattaaatagctaagtaagttgtcaggtcattttagtaacagcaataagc 560

                                                               
Query: 361 ctactaaacaatacaaatatgatatagctggacacccatgacagtatcaagt 412
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 ctactaaacaatacaaatatgatatagctggacacccatgaaagtatcaagt 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)