BAC Information

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BAC

Clone NameMSMg01-435L21
Chromosome13 (Build37)
Map Location 66,555,501 - 66,555,904
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik
Downstream geneC330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435L21.T7 (MSMg01no435_l21.b1)MSMg01-435L21.TJ (MSMg01no435_l21.g1)
ACCAG526976AG526977
length802782
length of high quality
(start - end)		408 (43 - 450)418 (71 - 488)
definitionCHROMAT_FILE: MSMg01no435_l21.b1 PHD_FILE: MSMg01no435_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:36 2005CHROMAT_FILE: MSMg01no435_l21.g1 PHD_FILE: MSMg01no435_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:36 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCACTTTAGTAAAATACATGCCACATGTTTTCCAGTAGAAATTACCCAT
CCCCCCACCCCCACCCTTTCCTCACTATAAATTTCTAGATATTTTCTTAG
AACTAATTTTCAGGTAAAAATCTTTTCTCATGAGGTTTCTCTCCTGTATG
AATTCTCTAATGAATCATAAGATCATATTTGTGAGTGAAGCATTTGTCAC
ATTTACTACATTTGTAAGGCTTCTTTCTTGTATGAATTATCTGATGACTA
CTAGGACTGTGTTTGTTGTTACAGCATTTGTCACACTCACTACATTTATA
AGGTTTCTCTCCAGTATGAATTCTCTGATGAATATTAAGACTGTATTTGT
GAAAAAAGCATTTGTCACATTCACTACATCTGTAAGGTTTCTCTCCTGTA
TGGATTCTCTGATGTTGTCTAAGCTTGCATTTCTTGGTGAACATCTGGCA
CGCTTACTAAAATTTGTAAGGTTTCTTTCCCTATTGGGTTTGTTTTCACC
CGAAAAATTGGGGAAAGGTAAAAATTTTTTTTGCGCCTATACACTTGGGG
TCTTTTTTTCCTTAGGGGAATTCTTGGGGGGTACCCCTGGCTAAAACCAT
ACTTTATCCCCTTTTTCGTGTTCCCGCTCTGTGTGGCCCCTGGTGCTCCT
TTTTCCTTACGTTTTCTGTTTTTCCTTCTCTTTTATTCCTCCTTCCTTTC
TCTCTTTGATTTTCTTCTTATTATTACCCCTTTTCCTCCCCCTTTTATTT
AT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAACACACCACTTTCATCAATGGACAGATCG
TGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAA
ACAAATGGACTTAACAGATATCTACAGAACATTTTATCCTAAAACAAAAG
GATATACCTTCTTCTCAACACCTCATGGCACCTTCTCCAAAATTGACCAT
ATAATTGGTCACAAAACAGGCCTCAACAGATAGAAAAATATTGAAATTGT
CCCATGCATCCTATCAGACCACCATGGCCTAAGGCTGATCTTCAATAACA
ACATAAATAATAGAAAGCCAACATTCACGTGGAAACTGAAGTACACTCTT
TTCAATGATACTTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGAGTT
TTTTAGAGTTTAATGAAAATGAAGCCACATCATACCCACACTTAAGGGAC
ACAATGAAAGCATTTCTAAAATGAAAACTCATAGTTCTGAGGGGTTCCCA
AAGAAACTGGAGAGAGCCCCCCCAACAGTTTGGGACACACCCAAAAGTTC
TAAATAAAAGGAAGAATTCTCCCCGGAGGAGAACGGCGGGAATATTCCAT
TTCGAGAAGAACCCCCCGGGGAGCCGAAAAATTTTCTAAAATTCCCCACT
TGGGCGGGTCCTGTGGATTCAAAAAAAAAAAACCTTTTCTTATTTCTATA
GGGTGGGGGGGGTGTCCATTTATAATCAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_l21.b1 MSMg01no435_l21.b1 CHROMAT_FILE:
MSMg01no435_l21.b1 PHD_FILE: MSMg01no435_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:36 2005
         (408 letters)



>mm_chr13_66555297_66556104
          Length = 808

 Score =  781 bits (404), Expect = 0.0
 Identities = 404/404 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccactttagtaaaatacatgccacatgttttccagtagaaattacccatcccccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccactttagtaaaatacatgccacatgttttccagtagaaattacccatcccccc 264

                                                                       
Query: 65  acccccaccctttcctcactataaatttctagatattttcttagaactaattttcaggta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acccccaccctttcctcactataaatttctagatattttcttagaactaattttcaggta 324

                                                                       
Query: 125 aaaatcttttctcatgaggtttctctcctgtatgaattctctaatgaatcataagatcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaatcttttctcatgaggtttctctcctgtatgaattctctaatgaatcataagatcat 384

                                                                       
Query: 185 atttgtgagtgaagcatttgtcacatttactacatttgtaaggcttctttcttgtatgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttgtgagtgaagcatttgtcacatttactacatttgtaaggcttctttcttgtatgaa 444

                                                                       
Query: 245 ttatctgatgactactaggactgtgtttgttgttacagcatttgtcacactcactacatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttatctgatgactactaggactgtgtttgttgttacagcatttgtcacactcactacatt 504

                                                                       
Query: 305 tataaggtttctctccagtatgaattctctgatgaatattaagactgtatttgtgaaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tataaggtttctctccagtatgaattctctgatgaatattaagactgtatttgtgaaaaa 564

                                                       
Query: 365 agcatttgtcacattcactacatctgtaaggtttctctcctgta 408
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agcatttgtcacattcactacatctgtaaggtttctctcctgta 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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