BAC Information

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BAC

Clone NameMSMg01-436L08
Chromosome13 (Build37)
Map Location 80,721,025 - 80,879,207
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g, 2900024O10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436L08.T7 (MSMg01no436_l08.b1)MSMg01-436L08.TJ (MSMg01no436_l08.g1)
ACCAG527711AG527712
length761782
length of high quality
(start - end)
464 (51 - 514)391 (78 - 468)
definitionCHROMAT_FILE: MSMg01no436_l08.b1 PHD_FILE: MSMg01no436_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:51 2005CHROMAT_FILE: MSMg01no436_l08.g1 PHD_FILE: MSMg01no436_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(80,878,747 - 80,879,207)(80,721,025 - 80,721,415)
sequence
NNNNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTAGGTTATCTTCCTGTGATTTCAACATACAAACCACCATA
TCCTATATTAACACAACATGGATTTGCTTTCCTTTAGCAATCAGATTGGA
AACATAAATGTGTCTCACTGAATTAAATTATGCTATGCGAAGTGTTGGCT
TGTTTCCTGTTAATTGTTACAGGTGGGTTTGTACCCTTGGCCTTTCCAGC
CACAACTTACAAACTGCCTAAATATCCACAGGAGAAATTATTCAAGGTTA
AGAAGCAAATAGGTCATTAGTTTTCTCATATTCTCATGGCTGCCAGGAAG
CTCAGGACTTCAGTCTGCTCAGGTGCATAACAACTTCCCCGTCTGTGTAC
GTTTATTCCAGTGTTGTAAGCATTAGCAATATGCGTTCAGGGATCAAATT
TTTTTTGGATCTGGACATAGTATATGTTTTAAATAAAGGAGCAATGTANA
AGTTGTTCTTTAGACTGGAGATTGGGCTCAGTTAGTGTGGTACTTACCTA
GCATCCCCGAGCCCCGGGTTTGAACTGCAGCACATTTTACAGAAGGGACG
CTGTTGCATACCTAGAACTCCACATTTGAGTGGAAGAAGCGAAGAAATCA
CTCCAGGTTATCACGGAGGGGGCCCTCACAAATTTCATAATTCTACTTTC
TCGGGAGCTCTTTTTTTTGAAAACTCCCCCCCCCAAAATTCCCAAAAGCC
TTAGGATCTTT
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAACTTTCCAAGACTTTTATC
TTGAAGGGGTGTTGGATTGCTTTCTCAGCTCTGATCCACCTTCTGAGTCC
TGAGGTCAGAGCCCTCGCTCTAGGCTGACTCTCCTCTGGCAAGGAAGGTG
TCCAAGGGTCTGTGTCTCAGCTCTGCCTCCTGGCTGAGGATGAAGGCCTG
AAGAGACCCTCACCAAGAAGCTCTGTTGTTCTATTGCCCATGTGGTCTCA
GGTGATCATGAGGTCCTGGGTGTGCTAGGGCCCCTGTGGCATGGAGAGTC
CTTTGGTGCCCTAGACGCCCTTGGCCAGGTTTACGCAGAAGATGGTGTGG
CTGGCCCTAACCTGAATGGATCCCAGCCTCTGATCCTCTGGTCTGGGGGT
GTTCCTCAGTCCCTGTTCCTGCTGGCACAAGACCCTCCTGGATTCTTTGG
AGCTAATGTTGCATTCCACTCACCTGTGGAGGGGGGAACCAATGCCGGGT
ATGGTACCCAATGGCTAGGATGGTCTAAAAAACTGCCCAAATACCTGGTT
AGGGGGGAAACCCAAATTTTTCTTCCTAATTTCCCTTTTTATCTTACAAT
CCCCTTCTCCCTGAGGGAGAAAATTTATGGGCCCCTCCTCCCCCTAAAAT
AATTTTTTTTGGTCTCAAAAACAAAAAATTCTCTTTCTTCTTTAGTTCCA
TAATCCCAATTTTCCCCTTTCTTGTGTGCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_l08.b1 MSMg01no436_l08.b1 CHROMAT_FILE:
MSMg01no436_l08.b1 PHD_FILE: MSMg01no436_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:51 2005
         (464 letters)



>mm_chr13_80878543_80879407
          Length = 865

 Score =  862 bits (446), Expect = 0.0
 Identities = 457/461 (99%), Gaps = 1/461 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaggttatcttcctgtgatttcaacatacaaaccaccatatcctatattaacac 64
           ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 665 gaattctaggttagcttcctgtgatttcaacatacaaaccaccatatactatattaacac 606

                                                                       
Query: 65  aacatggatttgctttcctttagcaatcagattggaaacataaatgtgtctcactgaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aacatggatttgctttcctttagcaatcagattggaaacataaatgtgtctcactgaatt 546

                                                                       
Query: 125 aaattatgctatgcgaagtgttggcttgtttcctgttaattgttacaggtgggtttgtac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aaattatgctatgcgaagtgttggcttgtttcctgttaattgttacaggtgggtttgtac 486

                                                                       
Query: 185 ccttggcctttccagccacaacttacaaactgcctaaatatccacaggagaaattattca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ccttggcctttccagccacaacttacaaactgcctaaatatccacaggagaaattattca 426

                                                                       
Query: 245 aggttaagaagcaaataggtcattagttttctcatattctcatggctgccaggaagctca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aggttaagaagcaaataggtcattagttttctcatattctcatggctgccaggaagctca 366

                                                                       
Query: 305 ggacttcagtctgctcaggtgcataacaacttccccgtctgtgtacgtttattccagtgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggacttcagtctgctcaggtgcataacaacttccccgtctgtgtacgtttattccagtgt 306

                                                                       
Query: 365 tgtaagcattagcaatatgcgttcagggatcaaa-ttttttttggatctggacatagtat 423
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 305 tgtaagcattagcaatatgcgttcagggatcaaatttttttttggatctggacatagtat 246

                                                    
Query: 424 atgttttaaataaaggagcaatgtanaagttgttctttaga 464
           ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 245 atgttttaaataaaggagcaatgtaaaagttgttctttaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 865
Length adjustment: 10
Effective length of query: 454
Effective length of database: 855
Effective search space:   388170
Effective search space used:   388170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no436_l08.g1 MSMg01no436_l08.g1 CHROMAT_FILE:
MSMg01no436_l08.g1 PHD_FILE: MSMg01no436_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:52 2005
         (391 letters)



>mm_chr13_80720825_80721615
          Length = 791

 Score =  733 bits (379), Expect = 0.0
 Identities = 388/391 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaactttccaagacttttatcttgaaggggtgttggattgctttctcagctctgatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaactttccaagacttttatcttgaaggggtgttggattgctttctcagctctgatcc 260

                                                                       
Query: 61  accttctgagtcctgaggtcagagccctcgctctaggctgactctcctctggcaaggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accttctgagtcctgaggtcagagccctcgctctaggctgactctcctctggcaaggaag 320

                                                                       
Query: 121 gtgtccaagggtctgtgtctcagctctgcctcctggctgaggatgaaggcctgaagagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtccaagggtctgtgtctcagctctgcctcctggctgaggatgaaggcctgaagagac 380

                                                                       
Query: 181 cctcaccaagaagctctgttgttctattgcccatgtggtctcaggtgatcatgaggtcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcaccaagaagctctgttgttctattgcccatgtggtctcaggtgatcatgaggtcct 440

                                                                       
Query: 241 gggtgtgctagggcccctgtggcatggagagtcctttggtgccctagacgcccttggcca 300
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtgtgctaggggtcctgtggcatggagagtcctttggtgccctagacgcccttggcca 500

                                                                       
Query: 301 ggtttacgcagaagatggtgtggctggccctaacctgaatggatcccagcctctgatcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtttacgcagaagatggtgtggctggccctaacctgaatggatcccagcctctgatcct 560

                                          
Query: 361 ctggtctgggggtgttcctcagtccctgttc 391
           ||||||||||||||||||||| |||||||||
Sbjct: 561 ctggtctgggggtgttcctcaatccctgttc 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)