BAC Information

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BAC

Clone NameMSMg01-437L02
Chromosome13 (Build37)
Map Location 67,278,656 - 67,279,057
singlet/doubletsinglet
Overlap geneRsl1
Upstream geneLOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759
Downstream geneLOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437L02.T7 (MSMg01no437_l02.b1)MSMg01-437L02.TJ (MSMg01no437_l02.g1)
ACCAG528465AG528466
length782762
length of high quality
(start - end)
57 (93 - 149)403 (81 - 483)
definitionCHROMAT_FILE: MSMg01no437_l02.b1 PHD_FILE: MSMg01no437_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:10 2005CHROMAT_FILE: MSMg01no437_l02.g1 PHD_FILE: MSMg01no437_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCAATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCANAG
GNATCCGCGGAATTCCAGTTTCATTTTCCTCTATTGTCTTGTCCTTTCCA
CAATCCTGACATTTCTGNTCTCTTGAGCATCATAGAAGCATGTGTTCTCC
TTATCATATTCCAGTTTAGATGGTAGCAGGGCGGCGCTTTCTNNCTTTTT
TGAAATGTTTGTAATCTTTGATNAANNTTATGACTATACTTTCTAAAAAC
TGTATCTTAATGCTCATCTAAACAATGCCAAAAATTTCTATCATGCANGG
TATTCCNAAAAAATGCCACCANGAACCTTTAAAATGCTTAATTTTTTCTA
TCAAAAACGCTCCACAAAAATTTTAAAAAAAAAATCCANCCNTTTCCTAA
CANCCAACCCATTTTTACCAAAAAAAAAAAGCCCCCCAATAAANCTCCNN
NCCCCAAACCCAAAAAGGCNCCCCCCAACTCTTTCCNTTTTAAAAAACCC
CAAATTTTTTTTTACTAAAACANNNCNCCNCCCCAAAACCCCCCTCCCNC
CTACCNCCACCCCCCCAAAACCCTTTCCAAAAATTTCCCCCANCCCCNCC
TCTTTCTTTTTTTCTCTCCCCATACCCCCCCCCCCTCCCCCCCCCCCCCC
NCCCCCCCCCCCATTCTCCCCCTTTTTCCCCACCCCNNCCCCCCCCCCTC
TCCCCCTCCNNCCCTCTTCCCCCCTACCTTTTTCCCCCCCCCCTTTTCTT
ATCTACATTTTTTTTTTGTTTTTTATTTTTTG
CTTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTATAGAATCAGACCTA
GCTCCAGGGCAGAAATTAGCTTTGTTAGGAGGAGGAGAAATGAAAGCAAC
GGACAGGACACGGACATTTGAACTTGCATGTAGTTTTCATATCATTTGGA
TGGCAGGTGTTGGCAAGTCCTGTTCCCCATGCTTCCTTATCCTGAGATGA
GGCTAGCATACATTTCCTCTGATAGGTCTGTGTCCCATTGGACAGTGTGC
TAATAGTAATCATGTTCATCTACCCTGTATGTTTCCTGTCATGCAAGCTA
GGTGGTGTGTTAGCCTTCTTCACTCCAGCGTTCAGGTTTGTTAACTAGTT
TATAAACCACACCGGATTTTGAATATTATGCCATACTGAGTAAACTGTAA
GGTGACTTTAAATTTGTTTGAGCTCCCTGTTTCAGGCTAAACGTTGACTT
GTACAGAGGACTATATAATGGAACGTTGGTATTACCCGCCTACTCTATTA
TTGTCCGTATGAATGATCCACCTTTGACCTCCTCTTGTCTTCTACACACA
CTTCGTCCCCATTGCACTGCCTTTCCTTTATCTGTCTCTCCTCTACCCTC
TTTTGCCTTTATCCACACTTTGCTTGTTTTTTTTTATTGCTCAATTACGG
GTCTCTCTTCCTTTTTATCTCCCTTCTCTTTATTCGCACCTTCCTCCTTA
TCCCCTTTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_l02.g1 MSMg01no437_l02.g1 CHROMAT_FILE:
MSMg01no437_l02.g1 PHD_FILE: MSMg01no437_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:10 2005
         (403 letters)



>mm_chr13_67278456_67279258
          Length = 803

 Score =  754 bits (390), Expect = 0.0
 Identities = 399/402 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcttatagaatcagacctagctccagggcagaaattagctttgttaggaggaggagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcttatagaatcagacctagctccagggcagaaattagctttgttaggaggaggagaaa 260

                                                                       
Query: 61  tgaaagcaacggacaggacacggacatttgaacttgcatgtagttttcatatcatttgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaagcaacggacaggacacggacatttgaacttgcatgtagttttcatatcatttgga 320

                                                                       
Query: 121 tggcaggtgttggcaagtcctgttccccatgcttccttatcctgagatgaggctagcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcaggtgttggcaagtcctgttccccatgcttccttatcctgagatgaggctagcata 380

                                                                       
Query: 181 catttcctctgataggtctgtgtcccattggacagtgtgctaatagtaatcatgttcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 catttcctctgataggtctgtgtcccattggacagtgtgctaatagtaatcgtgttcatc 440

                                                                       
Query: 241 taccctgtatgtttcctgtcatgcaagctaggtggtgtgttagccttcttcactccagcg 300
           ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taccctggatgtgtcctgtcatgcaagctaggtggtgtgttagccttcttcactccagcg 500

                                                                       
Query: 301 ttcaggtttgttaactagtttataaaccacaccggattttgaatattatgccatactgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcaggtttgttaactagtttataaaccacaccggattttgaatattatgccatactgag 560

                                                     
Query: 361 taaactgtaaggtgactttaaatttgtttgagctccctgttt 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaactgtaaggtgactttaaatttgtttgagctccctgttt 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)