Query= MSMg01no437_l05.b1 MSMg01no437_l05.b1 CHROMAT_FILE:
MSMg01no437_l05.b1 PHD_FILE: MSMg01no437_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:10 2005
(574 letters)
>mm_chr13_27408543_27409520
Length = 978
Score = 1060 bits (548), Expect = 0.0
Identities = 566/574 (98%), Gaps = 4/574 (0%)
Strand = Plus / Plus
Query: 5 gaattctcctcttgactttcaagaaattcctggttttactgttgcttctaacctgaatat 64
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcctcttgactttcaagaacttcctggttttactgttgcttctaacctgaatat 264
Query: 65 acattcctcaataaattacctgtcttctcccaggccttagtaaatctcagctgaacaagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acattcctcaataaattacctgtcttctcccaggccttagtaaatctcagctgaacaagg 324
Query: 125 gaatcccagtaaaacagtacaggtctcagaatacaactatattatcagttctgatgtcaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaatcccagtaaaacagtacaggtctcagaatacaactatattatcagttctgatgtcaa 384
Query: 185 ggttcatgtatcaagctatcttcaatttatgatttttatagtttttcctttcttaaactt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggttcatgtatcaagctatcttcaatttatgatttttatagtttttcctttcttaaactt 444
Query: 245 tgct----ttaagcaaacacatatgtctttggagatatatcacagtgccaaaatgttgga 300
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgctttcattaagcaaacacatatgtctttggagatatatcacagtgccaaaatgttgga 504
Query: 301 cacagtagatcaatggaatcaaatcaagtatttgtttttattgccaaaagtaaaactgtt 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 505 cacagtagatcaatggaatcaaatcaagtatttgtttttattgccaaaagaaaaactgtt 564
Query: 361 acatagcagtactggaacattttatattcagattagcttcttatatgaccttggcagtga 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atatagcagtactggaacattttatattcagattagcttcttatatgaccttggcagtga 624
Query: 421 gcacatacctggagataaagtttattctgctgttcatcattcactcattaacaccaatgc 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 625 gcacatacctggagataaagtttattctgctgttcatcattcgctcattaacaccaatgc 684
Query: 481 tgtttcattgttcttcacctgcatctattcatacataggctactcagcaagaaacaagtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtttcattgttcttcacctgcatctattcatacataggctactcagcaagaaacaagtg 744
Query: 541 tctactttctcatagctcagaaaggcaaatatat 574
||||||||||||||||||||||||||||||||||
Sbjct: 745 tctactttctcatagctcagaaaggcaaatatat 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 978
Length adjustment: 10
Effective length of query: 564
Effective length of database: 968
Effective search space: 545952
Effective search space used: 545952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_l05.g1 MSMg01no437_l05.g1 CHROMAT_FILE:
MSMg01no437_l05.g1 PHD_FILE: MSMg01no437_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:10 2005
(532 letters)
>mm_chr13_27566123_27567054
Length = 932
Score = 951 bits (492), Expect = 0.0
Identities = 522/532 (98%)
Strand = Plus / Minus
Query: 1 aggaaattactttcatgaatgctttttgcttagactgtttttgttgaatattttaaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 aggaaattactttcatgaatgctttttgcttagactgtttttgttgaatattttaaatta 761
Query: 61 atctaaaaatcaaagaaaatatattaatgggtgacttaacttattagtgcatgtgtatca 120
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 760 atctaaaaatcaaagaaaatatattaatgggtgatttaacttattagtgcatttgtatca 701
Query: 121 ttgaatgaaaatgatctgggtcatttgtaactgtcagtattatcattcagtttaaatggg 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 700 ttgaatgaaaatgatctgggtcatttgtaactgtcagtattatcatgcagtttaaatggg 641
Query: 181 tcaggatccctgagtgcctactgaggaccagtaaaaacttgattcccgtgaaaaaagcaa 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tcaggattcctgagtgcctactgaggaccagtaaaaacttgattcccgtgaaaaaagcaa 581
Query: 241 acaatcaaacagaaaaggtattacctggaaggcaggcaacagaatttaaatgggaaacaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 580 acaatcaaacagaaaaggtattacctggaaggcaggcaacagaatttaaatgtgaaacaa 521
Query: 301 accatgatcaactggtcctcttattagaaatgttagtttttatataacttgtattcttta 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 accatgatcacctggtcctcttattagaaatgttagtttttatataacttgtattcttta 461
Query: 361 cttcagcaaactatttggcaatcacttacattttccattttaaaatgtatatcatccata 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 460 cttcagcaaactatttggcaatcacttacattttcaattttaaaatgtatatcatccata 401
Query: 421 taaatgtgccaggcagcctcagttaaaaataatgcatatatagtttcagcctctttgaga 480
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 400 taaatgtgccaggcaccctcagttaaaaataatgcatatatagtttcagcctttttgaga 341
Query: 481 aaagaacacatgaaactagcaatactttattcctgttattttaatgttagag 532
|||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 340 aaagaacacatgaaactagcaatactttattccttttattttaatgttagag 289
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
