BAC Information

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BAC

Clone NameMSMg01-437N21
Chromosome13 (Build37)
Map Location 27,724,423 - 27,724,866
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1
Downstream genePrl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437N21.T7 (MSMg01no437_n21.b1)MSMg01-437N21.TJ (MSMg01no437_n21.g1)
ACCAG528597AG528598
length805780
length of high quality
(start - end)		476 (69 - 544)426 (129 - 554)
definitionCHROMAT_FILE: MSMg01no437_n21.b1 PHD_FILE: MSMg01no437_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:25 2005CHROMAT_FILE: MSMg01no437_n21.g1 PHD_FILE: MSMg01no437_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAGAGAGGACCCAATGGTACCAGGCTCAGTGGTCTACTCTAGTCT
TATGAGTCCTTCCCCTGCCTTCCAAATCTTCAGGTTTGGGACAGGATTCA
GATCTTGTGTTAATGAGCAGCTCCTTTTGTCCACCAGGTTTTACCATGTC
ATTCCAGGCATTATATTCTGTTCAGGAATAGCCAGGCTGGCACACTGTGT
ATTTTGGCCTAGCCTAGTGAATACTTACTCTTATCCCTAATCTTCCTGCA
CTAAGCTAAATACACAATTTTAATAGTCCAGAAAAATTCCTAACTGCATT
TAAAAATGTATCCATATACTCAGGTAAATTATAGCTCTTACCCCTTCTCA
AAGAAATTCCCAATCTCAAATTTCCCAGTACATGTATATTAGCTGCAGCT
CTCAGGCATTATCAGAAAACTTCCTTTGTGAAGTGCATAGTGATAAAGGT
AGAAACTTTCAAATAATAAAAGGGCAGAGAACAAGAATTATTGGGATGTA
ACCCACCAAAGGGATATTTATATATATAAATATGTATATGTATGCATATA
TATATGTCACACCAAACCCCACTTTTCTGAAACTACTTTGAAAAGAAAGC
CGAGAAAATGTTTTAAAAAAAAAAGGACAAAAAGGCATAAAAAAATGGGC
GTTTCTTCTTTCTCCTTCCCCCCCTTTNCTCTCTCCTCCTTTTACTTTTT
TTCCTATTTTCCTACCCTATTTTTTCCTTCATTTTTCTGCCTCCACCAAT
TTCTG

TGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTTCCGTCACCGGGTAGNCNNAAGGCAGGGGGGTCTAAGTTTG
CTGTCCCTTAATGTTTCTCCCAAGAACATGTCACTCAAAGGAAAAGTATT
TCTAGCTTTTGGTAGCCAAGGGTAAGCTGAAGAAAACATCTTTTAAGTCC
AGAACAGAATACCATTTCTGATCCGGAGGTAGAGAGCTCAAAAGAGTATA
AGGGTTAGCTACAGTTGGGTATATGTCTATCACACTGTGGTTAACTTCCC
GTAGATCTTGGACGGGGTAGTAGTCATTGGACTTTGGCTTCTTCACAGGC
AATAATGGTGTGTTCTAGGCTGACTGGCATGACCTAAGGACTCTTAAGGC
CAACAGATTCTAGATATGGGGAATGATCCCCTTTTGTGTCTCTTAGGACA
TGGGATATTGGCAGACCTGTGCTGGGTGTACTCCTGGCTTGAGCTCTACT
AATACAGGGGTTGAATGTTTTCCCAGTCCCATGTCTCTAATCTCTGTCCA
TGCCTAGGGAAAATCTGTGAGCCAGGCATCCTCGTCCTTAATTGGGGGTG
GATGGTGCCTTTGAAAAGTTTATACTCAGGCTCATATGCCTTGTCCCGGG
GACAGGACTGTGAATGTTTTTCCAATCCCGGCCTCAAAAGAGCATATCCC
CGGGTCAAACCGCTTTTTCTCTCCCCTTTTTCTTCTGTCCACTTTTTCTT
CCATCTGTCTGTAACGCCGTTTTATTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_n21.b1 MSMg01no437_n21.b1 CHROMAT_FILE:
MSMg01no437_n21.b1 PHD_FILE: MSMg01no437_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:25 2005
         (476 letters)



>mm_chr13_27724423_27725298
          Length = 876

 Score =  843 bits (436), Expect = 0.0
 Identities = 442/444 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggtaccaggctcagtggtctactctagtcttatgagtccttcccctgccttccaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atggtaccaggctcagtggtctactctagtcttatgagtccttcccctgccttccaaatc 385

                                                                       
Query: 61  ttcaggtttgggacaggattcagatcttgtgttaatgagcagctccttttgtccaccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcaggtttgggacaggattcagatcttgtgttaatgagcagctccttttgtccaccagg 325

                                                                       
Query: 121 ttttaccatgtcattccaggcattatattctgttcaggaatagccaggctggcacactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttaccatgtcattccaggcattatattctgttcaggaatagccaggctggcacactgt 265

                                                                       
Query: 181 gtattttggcctagcctagtgaatacttactcttatccctaatcttcctgcactaagcta 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 264 gtattttggcctagcctagtgaatacttactcttatccctaatcttcctgcactaaccta 205

                                                                       
Query: 241 aatacacaattttaatagtccagaaaaattcctaactgcatttaaaaatgtatccatata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aatacacaattttaatagtccagaaaaattcctaactgcatttaaaaatgtatccatata 145

                                                                       
Query: 301 ctcaggtaaattatagctcttaccccttctcaaagaaattcccaatctcaaatttcccag 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ctcaggtaaattatagcttttaccccttctcaaagaaattcccaatctcaaatttcccag 85

                                                                       
Query: 361 tacatgtatattagctgcagctctcaggcattatcagaaaacttcctttgtgaagtgcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  tacatgtatattagctgcagctctcaggcattatcagaaaacttcctttgtgaagtgcat 25

                                   
Query: 421 agtgataaaggtagaaactttcaa 444
           ||||||||||||||||||||||||
Sbjct: 24  agtgataaaggtagaaactttcaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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