BAC Information

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BAC

Clone NameMSMg01-437P02
Chromosome13 (Build37)
Map Location 12,813,215 - 12,813,568
singlet/doubletsinglet
Overlap genenone
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744
Downstream geneEG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437P02.T7 (MSMg01no437_p02.b1)MSMg01-437P02.TJ (MSMg01no437_p02.g1)
ACCAG528655AG528656
length787780
length of high quality
(start - end)
395 (47 - 441)402 (82 - 483)
definitionCHROMAT_FILE: MSMg01no437_p02.b1 PHD_FILE: MSMg01no437_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:30 2005CHROMAT_FILE: MSMg01no437_p02.g1 PHD_FILE: MSMg01no437_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:31 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCCCCCCCAAAATTCGTGGCTGTTAATCGACTCATTATTTCCAGAGGATC
CGCGGAATTCAGATATTGCTACTGCAAGATTTAACTCTCTCATCCTCACA
CACACCAAACCACCTGGCTTTTCATCATGTGCCCTGGAAAAACCCATGTC
AATTATATCACACACACACACACACACACACACACACACGCACACGCACA
CGCACACGCACACGCACACGCACACGCGCACACGCGCACACACACGCACG
CGCACACACACACACACACACACACACACACGCACACGCGCTACATGAGC
AACAGCTAGAATCACTTAGGTCTAATTGTTTCAACTCAACTGCAGAGGAG
GTGGTCAGAGCCACTTGGAATGGAAGGGTGCTTCCTGTTTTAAAAGCATT
TCCTGTCTCTTTTCCAACATTAATGCGAACATACAGACATGGGGAATCTA
CTGGGAATCGTCTTTTGTAGACAGTCAATGGAAGGAAATCATGTCAGATT
CCACACAAATGCACCGAAAAGAAATGCCTCTTTCTTTGCCATTAATTGCA
TTAGTGCCAGCCCCCAAGGTTATCTTATTTTTCTCTAGGCAATTACCCCT
CCCCTGAACACTCGGAAAGTTTTTATGCTAAGTCTATTTTTCGTAACTTC
TACCCCTTTCATTATAACACAATCCCCCTCATATCACCCCTATTGTCTTG
TCCCCGTCTCTTATAATGTCTACTTTTATACAACACTATACCTCCTCTCT
TTTCGTCTTATATCCTTCTTCCCCCTTCCCTTCTCCN
TTTCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCTTTTGACTCCTCCAA
ATGCAAAGGAACAGGAGGGAAGGAGGGGCTGTTCTGGTTTCATAGCGCCT
GTGTCACCCAGGAAGTGGCATACACTGTTAGGAAGTGGGCTTCTATTCGT
TATGAATGTATACTCAACCTCTGGAATAAACACTCAAAAATGCTATGTTA
TGTAGCTGATATGTTAAGAAATTGGGATCATATTACTCAATTTAAACTTC
AACAAGTAGAAAGATGGTAGAAGACAAAAATAGAAAGAAAGCAATGGTGT
TGAACAGAAAATCAAAGCAGGTCTGATAGACGATATCCAGGTATTCCACT
GACCACTTTGATATCAATGCTCTAAAAATGATAATTAGAAGGGCCAGGCA
TGGTGGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGA
TTTCTGAGCTCGAGGTTTAGCTGTTCCACTTAGTAAGCTCCCTGACTTTC
TTTTCTTACCTGACAAACTTCTGCCTTTGTTATTCATCTTCTTCCTTTAT
TGATTGATCCTCTTCCACCCCTTTTTGCTCTTTTCTATCTCCTTTCTTTT
GTTTTTACCTGCTTTTTCTTCATTCATTCTTCTCCCCCTTTTTATTTGGG
TAATTCCAACCAACTTTGTCTTTTCTTTTTTTTTCCCCATCGCTAATTAT
TTCCCCCTCCTCTCTCTTTTATCTTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_p02.b1 MSMg01no437_p02.b1 CHROMAT_FILE:
MSMg01no437_p02.b1 PHD_FILE: MSMg01no437_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:30 2005
         (395 letters)



>mm_chr13_12812774_12813568
          Length = 795

 Score =  638 bits (330), Expect = 0.0
 Identities = 351/364 (96%), Gaps = 10/364 (2%)
 Strand = Plus / Minus

                                                                       
Query: 32  gatttaactctctcatcctcacacacaccaaaccacctggcttttcatcatgtgccctgg 91
           ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 795 gatttaactctctcatcctcacatacaccaaaccacctggcttttcatcacgtgccctgg 736

                                                                       
Query: 92  aaaaacccatgtcaattatatcacacacacacacacacacacacacacacacgcacacgc 151
           |||||||||||||||||||||||||||||||||||||||||||||||||          |
Sbjct: 735 aaaaacccatgtcaattatatcacacacacacacacacacacacacaca----------c 686

                                                                       
Query: 152 acacgcacacgcacacgcacacgcacacgcgcacacgcgcacacacacgcacgcgcacac 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acacgcacacgcacacgcacacgcacacgcgcacacgcgcacacacacgcacgcgcacac 626

                                                                       
Query: 212 acacacacacacacacacacacacgcacacgcgctacatgagcaacagctagaatcactt 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acacacacacacacacacacacacgcacacgcgctacatgagcaacagctagaatcactt 566

                                                                       
Query: 272 aggtctaattgtttcaactcaactgcagaggaggtggtcagagccacttggaatggaagg 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggtctaattgtttcaactcaactgcagaggaggtggtcagagccacttggaatggaagg 506

                                                                       
Query: 332 gtgcttcctgttttaaaagcatttcctgtctcttttccaacattaatgcgaacatacaga 391
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 505 gtgcttcctgttttaaaagcatttcctgtctcttttccaacattaatgtgaacatacaga 446

               
Query: 392 catg 395
           ||||
Sbjct: 445 catg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)