Query= MSMg01no437_p03.b1 MSMg01no437_p03.b1 CHROMAT_FILE:
MSMg01no437_p03.b1 PHD_FILE: MSMg01no437_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:31 2005
(546 letters)
>mm_chr13_85043232_85044178
Length = 947
Score = 1036 bits (536), Expect = 0.0
Identities = 542/544 (99%), Gaps = 1/544 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaaagacaagttgtttaaaaagagaagaaatgacaaatttatctaagaatttca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ggaattcaaagacaagttgtttaaaaagagaagaaatgacaaatttatctaagaatttca 688
Query: 64 tgcgatcatatcagtggtcatgtgctacatgtaactatgagtggtaatttaaatctcaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tgcgatcatatcagtggtcatgtgctacatgtaactatgagtggtaatttaaatctcaca 628
Query: 124 tttgtagtgtgctatgtttatttaaaagtttcagaattcagtaaggattctgtttaacta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tttgtagtgtgctatgtttatttaaaagtttcagaattcagtaaggattctgtttaacta 568
Query: 184 tcaaccactaaatgtttacaactgtaataaacatcatagaatctttatcataccagatca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tcaaccactaaatgtttacaactgtaataaacatcatagaatctttatcataccagatca 508
Query: 244 aaactgtagatttggaatcattccactaaagaacattgtttaaacaatatcctcttattt 303
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 507 aaactgtagatttggaatcattccactaaagaacattgtttaagcaatatcctcttattt 448
Query: 304 aatagcttccatataagtggataaatatagccaatggattttttcgtttcacttggttta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aatagcttccatataagtggataaatatagccaatggattttttcgtttcacttggttta 388
Query: 364 aaatagtccaaattactttccaaaccaaaaatgagtaaactataatttcacaagacgaac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaatagtccaaattactttccaaaccaaaaatgagtaaactataatttcacaagacgaac 328
Query: 424 ctatctgtctatagctctataatttcatttataattctattttaggtatacaaaattttt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctatctgtctatagctctataatttcatttataattctattttaggtatacaaaattttt 268
Query: 484 ttaaatggaa-ttttttaatccaactgtttttgattggacagatatggaatgtataattt 542
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttaaatggaatttttttaatccaactgtttttgattggacagatatggaatgtataattt 208
Query: 543 aagg 546
||||
Sbjct: 207 aagg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 947
Length adjustment: 10
Effective length of query: 536
Effective length of database: 937
Effective search space: 502232
Effective search space used: 502232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_p03.g1 MSMg01no437_p03.g1 CHROMAT_FILE:
MSMg01no437_p03.g1 PHD_FILE: MSMg01no437_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:31 2005
(519 letters)
>mm_chr13_85000651_85001568
Length = 918
Score = 917 bits (474), Expect = 0.0
Identities = 507/518 (97%), Gaps = 1/518 (0%)
Strand = Plus / Plus
Query: 1 attggtatctgaaattgttgtctgtgctggaaaaataggagctaatactgtgtcttattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 attggtatctgaaattgttgtctgtgctggaaaaataggagctaatactgtgttttattt 260
Query: 61 catagagcctttcttgaattaaactatatagctcataagatcatgttaaaggtgtataat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 catagagcctttcttgaattaaactatatagctcataagatcatgttaaaggtgtaaaat 320
Query: 121 tcagaattatatatatactaaattcacacctgtacattaaaaaatctggtaattttatgt 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tcagaattatatatatactaaattcacacctgtacat-aaaaaatctggtaattttatgt 379
Query: 181 gatgattgataagtataataagaagaattgtaggataaaccaaactcagctgtggctaat 240
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 380 gatgattgataagtataataaaaagaattgtaggataaaccaaactcagctgtggctaag 439
Query: 241 atggaaaagaagagaaatatgaaagagtgcatcttcaaattttatctttgatttgggaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 440 atggaaaagaagagaaatatgaaagagtgcatcttcaaattttatctttgatttggggaa 499
Query: 301 tattacacaatgaacttacgttattcagtatttatgatctgctggttattaatctaaggt 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tattacacaatgaacttaggttattcagtatttatgatctgctggttattaatctaaggt 559
Query: 361 gtttctctcacatactcttaagtgccaatctatgaagcaaggacaataattatcttcact 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtttctctcacatattcttaagtgccaatctatgaagcaaggacaataattatcttcact 619
Query: 421 tcatgaataataaaatagattatcagagtaccatatagtttataaataacctattgtata 480
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 620 tcatgaataataaaatagactatcagagtaccatatagtttataaataacttattgtata 679
Query: 481 accagtacagcctgaatcatcacgaagatctaacctaa 518
|||||||||||||||||||||| |||||||||||||||
Sbjct: 680 accagtacagcctgaatcatcatgaagatctaacctaa 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 918
Length adjustment: 10
Effective length of query: 509
Effective length of database: 908
Effective search space: 462172
Effective search space used: 462172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
