Query= MSMg01no438_b22.b1 MSMg01no438_b22.b1 CHROMAT_FILE:
MSMg01no438_b22.b1 PHD_FILE: MSMg01no438_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:46 2005
(532 letters)
>mm_chr13_35468530_35469463
Length = 934
Score = 955 bits (494), Expect = 0.0
Identities = 516/524 (98%), Gaps = 2/524 (0%)
Strand = Plus / Minus
Query: 8 gaattcttactactcttgcagacttagagtatcaaaggaacttgcctctattggagcaat 67
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gaattcttactactcatggagacttagagtatcaaaggaacttgcctctattggagcaat 672
Query: 68 ggatgatgtttcctctagttttgtaagatgaaagaagagaaggacaggggtgctgtgctt 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ggatgatgtttcctctagttttgtaagatgaaagaagagaaggacaggggtgctgtgctt 612
Query: 128 tctgagttaagggaaaatgagagccactgttagctaacaagttctattttctcaattaag 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tctgagttaagggaaaatgagagccactgttagctaacaagttctattttctcaattaag 552
Query: 188 tataatcacacggataacatctgaaagcagtggcacagagtgggggcaggaaatagaggg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tataatcacacggataacatctgaaagcagtggcacagagtgggggcaggaaatagaggg 492
Query: 248 tgatagcgaggaagtgcatggaggatggaggagcttgtagaaggtaatagagcctcatgg 307
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 491 tgatagcgaggaagtgcatggaggatggaggagcttggagaaggtaatagagcctcatgg 432
Query: 308 --gagagagagcaagaatacaatttcagctgtctctcctgttcagggatgtgttccaaga 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gagagagagagcaagaatacaatttcagctgtctctcctgttcagggatgtgttccaaga 372
Query: 366 tctacaatgattcctgaaactataggcaatatccaggcaggtatacagtgcatttgtgtg 425
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 371 tctacaatgattcctgaaagtataggcaatatccaggcctgtatacagtgcatttgtgtg 312
Query: 426 tacatgtgcatatatatcaaagcctagaattttcaaccttccacttgaagaaagaaatct 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tacatgtgcatatatatcaaagcctagaattttcaaccttccacttgaagaaagaaatct 252
Query: 486 cttatagatcttaatcaccaacgtcactagtcttacaatttggg 529
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cttatagatcttaatcaccaacgtcactagtcttacaatttggg 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 934
Length adjustment: 10
Effective length of query: 522
Effective length of database: 924
Effective search space: 482328
Effective search space used: 482328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_b22.g1 MSMg01no438_b22.g1 CHROMAT_FILE:
MSMg01no438_b22.g1 PHD_FILE: MSMg01no438_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:46 2005
(454 letters)
>mm_chr13_35329140_35329995
Length = 856
Score = 816 bits (422), Expect = 0.0
Identities = 447/456 (98%), Gaps = 2/456 (0%)
Strand = Plus / Plus
Query: 1 caaaagctcaagacaagatgtttcccaaccgttggtgaaggattgctaggtactcgatct 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 caaaagctcaagacaagatgtttcccaaccactggtgaaggattgctaggtactcgatct 260
Query: 61 gtccatcattggagtagaggttgacctgaaaacaagaatttatgagcaagatgcattata 120
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 261 gtccatcattggagtagaggttgacctgaaaacaataatttatgatcaagatgcattata 320
Query: 121 tatatgtata--tgtgtgtgtttgaaattgtcaaaaataaatctaaaatattttaaagaa 178
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatgtatatgtgtgtgtgtttgaaattgtcaaaaataaatctaaaatattttaaagaa 380
Query: 179 acctttctttgtgaagcacaagactgttcttgccaatttctcaatttgcaaacttaatat 238
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctttctttgtgaagcacaaaactgttcttgccaatttctcaatttgcaaacttaatat 440
Query: 239 ttaagttttaaaaaggggtccttagtcagaaggagtaagagacctgtagcaccaagatgt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaagttttaaaaaggggtccttagtcagaaggagtaagagacctgtagcaccaagatgt 500
Query: 299 gctagttaaaaacaaagagtcaccatttctgcggaatgaagaaatattcagtaaatattg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctagttaaaaacaaagagtcaccatttctgcggaatgaagaaatattcagtaaatattg 560
Query: 359 aataaagtttaaatatagagttgggaatgggcacaagtaagcagtctaggcttaggtata 418
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtaaagtttaaatatagagttgggaatgggcacaagtaagcagtctaggcttaggtata 620
Query: 419 gtcgtgcccacccctgatccatcactgtccaggcta 454
|| |||||||||||||||||||||||||||||||||
Sbjct: 621 gttgtgcccacccctgatccatcactgtccaggcta 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 856
Length adjustment: 10
Effective length of query: 444
Effective length of database: 846
Effective search space: 375624
Effective search space used: 375624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
