BAC Information

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BAC

Clone NameMSMg01-438C24
Chromosome13 (Build37)
Map Location 66,555,507 - 66,555,992
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik
Downstream geneC330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438C24.T7 (MSMg01no438_c24.b1)MSMg01-438C24.TJ (MSMg01no438_c24.g1)
ACCAG528841AG528842
length775772
length of high quality
(start - end)
460 (45 - 504)486 (73 - 558)
definitionCHROMAT_FILE: MSMg01no438_c24.b1 PHD_FILE: MSMg01no438_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:52 2005CHROMAT_FILE: MSMg01no438_c24.g1 PHD_FILE: MSMg01no438_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:52 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGCAGGTGCTGTGATATTTTGTACCTTCTTTTGGTGGCTGGACAG
ATGACTCCGTGTCATGGAATCTGGCTCCCTCTTGTGGCCTTCAGGTGTAA
AAGCAGGCAGTACTCTGTATACTTAATAAATAAATAAATCTTTAAAAGAA
AGAAAGAAAATTCCTTATGGAAGTTTCTTATAGATTTGGGAGTGATGACT
GGATGAGCGATCCTGCTTCCATTTCTCCTTCCAGGCGTCTTCAAGAGCTG
AGGGTCTGCTCTCAGGGCCGCTCAGAGGGAGACAGAGATGCTGCATTTAT
AGGATTGGAAGGGAAGCAAGGACAGGCGCTGTAATGGGAAGAGCTCATCA
CTAGTGGGCAACCTTCCCGGGATGGGAACTGGAAGTAGCAGCGCCACACC
ACCGCTGCCAGCGCCTGCTGCAACTAGGATCATGGAGGTCCAGGTGCAGG
GACAGAGCACTCCTGCACGTTTGCGCGTGTGTCAAGGTCTGTGTCGCTGT
GACAGGAGGTATGCGGGTCAAAACGTTTAGTCTGCGACCCTGAGAGTTTA
TCAGGATTCCTTTCTAGGGTTGTGCTTTTGTTGAGTATAGGTCTCTGGTT
GTTTACCCTCCACGCTTGGTTCTCCTCCTTTCTCCTTCCCCCTACATTCA
CTATCTTTACCTTCTCTAATTCATTATATCTACCTTTTTTCTCTGTTAAC
GGAACTACCCTCTATTTTATATTTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACTTTAGTAAAATACATGCCACATGTT
TTCCAGTAGAAATTACCCATCCCCCCACCCCCACCCTTTCCTCACTATAA
ATTTCTAGATATTTTCTTAGAACTAATTTTCAGGTAAAAATCTTTTCTCA
TGAGGTTTCTCTCCTGTATGAATTCTCTAATGAATCATAAGATCATATTT
GTGAGTGAAGCATTTGTCACATTTACTACATTTGTAAGGCTTCTTTCTTG
TATGAATTATCTGATGACTACTAGGACTGTGTTTGTTGTTACAGCATTTG
TCACACTCACTACATTTATAAGGTTTCTCTCCAGTATGAATTCTCTGATG
AATATTAAGACTGTATTTGTGAAAAAAGCATTTGTCACATTCACTACATC
TGTAAGGTTTCTCTCCTGTATGGATTCTCTGATGTTGTCTAAGCTTGCAT
TTCTTGGTGAAACATCTGGCACGTTCACTACATTTGTAAGGTTTCTTTCC
ACTATTGGTTTGTTTCAGGCTGAGTATATGTGTAGAGCTCACAATTTTAT
CCAGCACTATACCATTGTGCTCCTTCTTTCCTATGAGGGATCCCTTGATG
GAGACCAGGGGATAGAGCCCAATTTTAACATGTTTTTACCGTTTTTCATG
TTTTGCAAGGGCCTCTGGGGGGTTCCCTTTTGTTAGACCGTTTATGGTTG
GAAGAACCCTAACGCGGCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_c24.g1 MSMg01no438_c24.g1 CHROMAT_FILE:
MSMg01no438_c24.g1 PHD_FILE: MSMg01no438_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:52 2005
         (486 letters)



>mm_chr13_66555307_66556192
          Length = 886

 Score =  940 bits (486), Expect = 0.0
 Identities = 486/486 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactttagtaaaatacatgccacatgttttccagtagaaattacccatccccccaccccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactttagtaaaatacatgccacatgttttccagtagaaattacccatccccccaccccc 260

                                                                       
Query: 61  accctttcctcactataaatttctagatattttcttagaactaattttcaggtaaaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accctttcctcactataaatttctagatattttcttagaactaattttcaggtaaaaatc 320

                                                                       
Query: 121 ttttctcatgaggtttctctcctgtatgaattctctaatgaatcataagatcatatttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttctcatgaggtttctctcctgtatgaattctctaatgaatcataagatcatatttgt 380

                                                                       
Query: 181 gagtgaagcatttgtcacatttactacatttgtaaggcttctttcttgtatgaattatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtgaagcatttgtcacatttactacatttgtaaggcttctttcttgtatgaattatct 440

                                                                       
Query: 241 gatgactactaggactgtgtttgttgttacagcatttgtcacactcactacatttataag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgactactaggactgtgtttgttgttacagcatttgtcacactcactacatttataag 500

                                                                       
Query: 301 gtttctctccagtatgaattctctgatgaatattaagactgtatttgtgaaaaaagcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttctctccagtatgaattctctgatgaatattaagactgtatttgtgaaaaaagcatt 560

                                                                       
Query: 361 tgtcacattcactacatctgtaaggtttctctcctgtatggattctctgatgttgtctaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtcacattcactacatctgtaaggtttctctcctgtatggattctctgatgttgtctaa 620

                                                                       
Query: 421 gcttgcatttcttggtgaaacatctggcacgttcactacatttgtaaggtttctttccac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcttgcatttcttggtgaaacatctggcacgttcactacatttgtaaggtttctttccac 680

                 
Query: 481 tattgg 486
           ||||||
Sbjct: 681 tattgg 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)