BAC Information

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BAC

Clone NameMSMg01-438L09
Chromosome13 (Build37)
Map Location 64,124,299 - 64,124,705
singlet/doubletsinglet
Overlap genenone
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575
Downstream geneHsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438L09.T7 (MSMg01no438_l09.b1)MSMg01-438L09.TJ (MSMg01no438_l09.g1)
ACCAG529241AG529242
length1,420780
length of high quality
(start - end)
---408 (66 - 473)
definitionCHROMAT_FILE: MSMg01no438_l09.b1 PHD_FILE: MSMg01no438_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:35 2005CHROMAT_FILE: MSMg01no438_l09.g1 PHD_FILE: MSMg01no438_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGAGGTAGAACNGAAGGAGTCGAGAGAGGGTACACCCTTCCTCCCTCCTC
ACNCCTGCCGCAATCCTACCNTCACAGCTACCACGAACTGGACAGACGTA
CGCCTAGGCGCGCGCGACGGCGTCTGCGTTCTCTGCGTGCTTACCACTAT
CTCTATAAGTCTTACCACGCTCCCGACNTCTCTGATGAAGGATCAGATGC
ANCATCCTAGCGCAACGTCGACTGTAGTCGTATGATGTGATGCACTCNCC
AGTGCGATCTGCGCACCATCTCGAGACTAGGCGCGACAGCGCGTGATGAC
TAGATGAACGAGGGAGCGCTGGCGAGCGAACGANTGTACCATAAGTTAGC
GATGCGCGTGCTGCTGAGTGTCTGATGTGGCCTCTTGTTCGCTTGGCTCA
TCGAGTCAACGCACGCGCANCACATATGACGTCTACGCACCTTGTGCACC
ACGTCCTGACAACAGANATATAGCCAGCAACACGTCATCTCGCTCACACA
ACGTGACGCTCATCCTCAACAGACATCGCACCTATAGCCGCTGCACTGTC
CTACGCGCTCTCTCGCACACTAGTGCGCTTCCATATACGGTCCGCTCGAC
CGACGCGCNACGCACTCAACGCNCCTCATCGCCGTAGACGATCACGTGAC
ATCNATAATGCNCGCTGAGCGCTGTCGTGCGCACGATCTAATACGGATCG
CATCTGCTGCAGCGCTGCGTGATCGCAGTGAATGCGTCATAGCGTACGCA
GATATCATAACACGCCTCATCTGCGCGCGTCTAAGCGTGCATACTACGGC
TGGACGACTAATACTTCCGTCTCTGTCTGCCTGTCACGCAACGCGACAGA
TGCCATACCTTGCTGGCGGTGAGTGCGACCGGACTGANGTGCAGCGCGCG
ACGTCGCCGCNAGCAGTATATCATACTCTACCGCCATCTAGATGACTCGA
TCTCACGANACAATGCTGCTGGACTATATGACGCGATGTGTGTGTGTGTA
GATGATGATACGTATGAGGTGCGCTGACGTATGTCCAGAACGTGTCCGCG
CGTCATGCGCGCAGTGCATCACGTAGCGTGCTGCACGTGCGCGAGGCCGC
GTTGCGGATGCTGTCCACACGACGCANCAATCTGCGATCTATAGTGAGTG
AAGAGTCGTGGAGTATGNAGACGCGACACGCTAGTTACTAGTCTCGTAGC
TCTGCAACACANTGCCGATCGGGAATACACCGCTACGATATNGTGATATA
CATCGACTGATCATCTATCTGAGCTATCTCGTCGCGATCATCGTTACACA
CTCTTCAAATNGCGCACCTGTCAGTTACGGANTCCGATACNGCGACAGAA
TTACTATATCATACGCACCTAGATNTCCCAATATACACATNTACAGCCGA
CGCTGATAGACAGTAGATGN
GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGCTCCATTGAGTCATTCCAGGCTCATCTGAGTCC
TTCCAAGCAGGATTACTCCCACCACCTCTCAAAACAGGAAGCCGGACCAG
GACGCTGAGACGGGCCAGTGGCTGGATCACTTGCCCTTTGGTCTCCACAG
TGTGGTTGCTATGAGCCCCCAAGTCCTCCTAGCAAGCTTCCCTTGACTTG
GCCTCTACAACCCAATTTCACATTTTCTACCTTGTCACCAGTTACCCGAG
TGCAGGTTTGCCTTGTCTTTTATGTGGCTCTGAGAAACCTGTGTTTGATT
TACTGCTCTGCTCACCGATCAGCACACGAAGCAGGCTGTGCTTACTTGAG
TTGGGCACACGCGCCATTTACACAAACGCACATGTGTATCACACGGCAAG
TGTTCTTTCTGCCACAGGGTGCGGGGTGAGGGGAGTGCAGGGCTGCTCCA
AGTGCTTCATATGCTTGCTGGTTATGCGTGCGCTCTCCTGCCATTATCGT
TGCCCGATGCCTATTCTATGACTTGTGTGTTACTAGCGCCTCTTTAACGA
CTACATATTTGCTTTGTCGTTACACCTCTCCTAAAAAACTTTTTTGCCAT
TTTTTCACCCTTTCTTTCATCCTTTTCTTCTTCTTTATTTCCCTTTCTTT
TCTTGCATCATTTCTTCTTTCTTTCCTTTTCTACACTCTTTTCTCTCTTC
TGTATTTTTTTGTATTCTCTAATTCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_l09.g1 MSMg01no438_l09.g1 CHROMAT_FILE:
MSMg01no438_l09.g1 PHD_FILE: MSMg01no438_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:35 2005
         (408 letters)



>mm_chr13_64124099_64124905
          Length = 807

 Score =  737 bits (381), Expect = 0.0
 Identities = 401/411 (97%), Gaps = 7/411 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctccattgagtcattccaggctcatctgagtccttccaagcaggattactcccaccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tgctccattgagtcattccaggctcatctgagtccttccaagcaggagtactcccaccac 260

                                                                       
Query: 61  ctctcaaaacaggaagccggaccaggacgctgagacgggccagtggctggatcacttgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctcaaaacaggaagccggaccaggacgctgagacgggccagtggctggatcacttgcc 320

                                                                       
Query: 121 ctttggtctccacagtgtggttgctatgagcccccaagtcctcctagcaagcttcccttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttggtctccacagtgtggttgctatgagcccccaagtcctcctagcaagcttcccttg 380

                                                                       
Query: 181 acttggcctctacaacccaatttcacattttctaccttgtcaccagttacccgagtgcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttggcctctacaacccaatttcacattttctaccttgtcaccagttacccgagtgcag 440

                                                                       
Query: 241 gtttgccttgtctttt---atgtggctctgagaaacctgtgtttgatttactgctctgct 297
           ||||||||||||       |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttgccttgtc----cagatgtggctctgagaaacctgtgtttgatttactgctctgct 496

                                                                       
Query: 298 caccgatcagcacacgaagcaggctgtgcttacttgagttgggcacacgcgccatttaca 357
           ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 497 caccgatcagcacacgaagcaggctgtgcttacttgagttgggcacacgtgctatttaca 556

                                                              
Query: 358 caaacgcacatgtgtatcacacggcaagtgttctttctgccacagggtgcg 408
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caaacgcacatgtgtatcacacggcaagtgttctttctgccacagggtgcg 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 807
Length adjustment: 9
Effective length of query: 399
Effective length of database: 798
Effective search space:   318402
Effective search space used:   318402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)