BAC Information

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BAC

Clone NameMSMg01-438N14
Chromosome13 (Build37)
Map Location 97,647,939 - 97,648,475
singlet/doubletsinglet
Overlap geneLOC625662
Upstream geneIqgap2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456
Downstream gene1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438N14.T7 (MSMg01no438_n14.b1)MSMg01-438N14.TJ (MSMg01no438_n14.g1)
ACCAG529345AG529346
length751772
length of high quality
(start - end)
533 (34 - 566)486 (69 - 554)
definitionCHROMAT_FILE: MSMg01no438_n14.b1 PHD_FILE: MSMg01no438_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:46 2005CHROMAT_FILE: MSMg01no438_n14.g1 PHD_FILE: MSMg01no438_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATT
CTTCTCTTCTCATTGCCTCTGCATTTAAACAAATGTTAATCTTCTGGCTC
TCACTCTCTATTTCAGGAGACAATGGTATTTCTTGCATGCTTCCGTAAGC
CAGATTGACAGGAGCGAGTAAGCCTGGCTGGGCATGTGCTGAGTCTCCCA
TAGTAGGAGGCTCCTGGCTCTTCTTGTCACTACTGATGTCTGAGTTACAT
GGCAGCTTTCTTAAACCAACACCAGATACTGCTGTAGCATTCTTATAGTT
TTGAATTTTCAGTCTTATCTTTTTCTGTTTCTTTGCTACAACTAAAAGAC
TCTTTTGTCTCGTGGCCAGGTTAGCCAGTTGTTCTCTCAAGGCCCCATGC
TTAAATGACTCCATGGACACCCTATAAGAAAAAGAAAAAAATATTAACAC
AGACTATGGGATATAAAAGATACTCCCTCTCTTAATGCGCATCAGCTTTA
AGTATAATAAAATCTGTATTTGAGATATAGTTTCCTTTATAAGGAAACTG
ACATTTATTTCAGATGAGNTTGATTTTAAGATAGTTTTAAATTTACCACT
TTTGCTATTTTATGGANATGAGTGTTTTTGCTTAATGATTATATGCACCC
CTTTTCGCCTGGGGCCGGAAATATAAGAAGGCTTTGGATGTCCAAAATCG
GAGTTATAATGTTTGTTTACCACCTGTAAGGACCTGGAAATTGTACCCCC
C
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTACTAAAACCATCTGGCCTTGGGCTTTTTT
TTTTTTGGTTGGGAGACTTTTAATGGCTGCTTCTATTTCCCTAGGGGTTA
TGGGATTGTTTATATGATTCAACTGGTCCTGATTTAACTTTGGTACCTGG
TATCTGACTAGAAAATCATCCATTTCATCTAAATTTTCTAGTTTTGTTGA
GTATAGGCTTTTGTAGTAGGATCTGATGATTTTTTTAAAAAAAATTTTTC
CTCAGTTTCTGTTGTTATGTTTCCCTTTTCATTTCTTATTTTGTTTATTT
GGATACTGTCTCTGTGCCCTTTAGTTAGTTTGACTAAGGGTTTATCTATC
TTGTTGATTTTCTCAAAGAATCAGCTCCCTGTTTTGTGATTCTTTGTATA
GTTCTCTTTGTTTCTACTTGATGGATTTCAGCTGAGTCTCTTTGTTTTAT
AGCTTTCAGATGTGCTGTTAAGTTGCTAGAATAGGGTCTCTCCCATTTCT
TTTTGAAGACACTCAGCTATGAGTTTTTCTCTTAACACATCTTTCATTGT
GTCCCATAAATTTAGGTATGCTGTGCCCTCCTTTTTTGTTAAAATCTANA
AAAACCTTTATTTTCCTTCCTTCCTCCCTTCCTTTCCTTCTTCCTTCCTT
CCTTTCTTCCTTCCTTCTTTCCTTCTTCCTTCCTTCTTTTTTTTCTCCCG
GAAAAAACCACATTTTATTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_n14.b1 MSMg01no438_n14.b1 CHROMAT_FILE:
MSMg01no438_n14.b1 PHD_FILE: MSMg01no438_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:46 2005
         (533 letters)



>mm_chr13_97647856_97648788
          Length = 933

 Score =  957 bits (495), Expect = 0.0
 Identities = 519/537 (96%), Gaps = 16/537 (2%)
 Strand = Plus / Minus

                                                                       
Query: 13  gaattcttctcttctcattgcctctgcatttaaacaaatgttaatcttctggctctcact 72
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaattcttctcttcttattgcctctgcatttaaacaaatgttaatcttctggctctcact 561

                                                                       
Query: 73  ctctatttcaggagacaatggtatttcttgcatgcttccgtaagccagattgacaggagc 132
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 560 ctctatttcaggagacaatggtatttcttgcatgcttccgtaagccagactgacaggagc 501

                                                                       
Query: 133 gagtaagcctggctgggcatgtgctgagtctcccatagtaggaggctcctggctcttctt 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gagtaagcctggctgggcatgtgctgagtctcccatagtaggaggctcctggctcttctt 441

                                                                       
Query: 193 gtcactactgatgtctgagttacatggcagctttcttaaaccaacaccagatactgctgt 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtcactactgatgtctgagttacatggcagctttcttaaaccaacaccagatactgctgt 381

                                                                       
Query: 253 agcattcttatagttttgaattttcagtcttatctttttctgtttctttgctacaactaa 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agcattcttatagttttgaattttcagtcttatctttttctgtttctttgctacaactaa 321

                                                                       
Query: 313 aagactcttttgtctcgtggccaggttagccagttgttctctcaaggccccatgcttaaa 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagactcttttgtctcgtggccaggttagccagttgttctctcaaggccccatgcttaaa 261

                                                                       
Query: 373 tgactccatggacaccctataagaaaaagaaaaaaatattaacac--------------- 417
           |||||||||||||||||||||||||||||||||||||||||||||               
Sbjct: 260 tgactccatggacaccctataagaaaaagaaaaaaatattaacacagaagattttcatca 201

                                                                       
Query: 418 -agactatgggatataaaagatactccctctcttaatgcgcatcagctttaagtataata 476
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tagactatgggatataaaagatactccctctcttaatgcgcatcagctttaagtataata 141

                                                                    
Query: 477 aaatctgtatttgagatatagtttcctttataaggaaactgacatttatttcagatg 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 aaatctgtatttgagatatagtttcctttataaggaaactgacatttatttcagatg 84


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)