Query= MSMg01no439_d23.b1 MSMg01no439_d23.b1 CHROMAT_FILE:
MSMg01no439_d23.b1 PHD_FILE: MSMg01no439_d23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:19 2005
(533 letters)
>mm_chr13_6045080_6046011
Length = 932
Score = 922 bits (477), Expect = 0.0
Identities = 516/531 (97%), Gaps = 5/531 (0%)
Strand = Plus / Minus
Query: 5 gaattctatccctatt--acactaactagtgatttacaaataagtaaataaagaataaaa 62
|||||||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gaattctatccc--ttggaaactaactagtgatttacaaataagtaaataaagaataaaa 675
Query: 63 gtaaaattaaaaaaatctgtggacatgggtattttatacaaaataatttacaaaagcaaa 122
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gtaaaatt-aaaaagtctgtggacatgggtattttatacaaaataatttacaaaagcaaa 616
Query: 123 ccaaaaatggaacaaaaatgtttaataaggaaatgcaattaaaataactattgaacaatg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ccaaaaatggaacaaaaatgtttaataaggaaatgcaattaaaataactattgaacaatg 556
Query: 183 tcttgttttctgcatctcacctgttgtcttttttcttctcttttatattcctctgctctt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tcttgttttctgcatctcacctgttgtcttttttcttctcttttatattcctctgctctt 496
Query: 243 tctctactctcaccatatgcatgtatggatgtgagtgcatgaattcatactcatgaagag 302
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 495 tctctactctcgccatatgcatgtatggatgtgagtacatgaattcatactcatgaagag 436
Query: 303 tatcttgttctggaatatattaaacattcagaagtcaaaaaacactgggccactagacag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tatcttgttctggaatatattaaacattcagaagtcaaaaaacactgggccactagacag 376
Query: 363 gctgtaaaacaagaaaatactccctgctaagtgagacaacactgtcatgctccgatttaa 422
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 375 gttgtaaaacaagaaaatactccctgctaagtgagacaacactgtcatgctatgatttaa 316
Query: 423 tcctaccgtgcagagtgtgattctcttcaggggatgacataggtttgcctttcaatatct 482
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcctaccatgcagagtgtgattctcttcaggggatgacataggtttgcctttcaatatct 256
Query: 483 tttttcttgcattatctannatgtttgcaattaatgtgctttattccaact 533
|||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 255 tttttcttgcattatctaaaatgtttgcaattaatgtgctttattccaact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 932
Length adjustment: 10
Effective length of query: 523
Effective length of database: 922
Effective search space: 482206
Effective search space used: 482206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_d23.g1 MSMg01no439_d23.g1 CHROMAT_FILE:
MSMg01no439_d23.g1 PHD_FILE: MSMg01no439_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:19 2005
(580 letters)
>mm_chr13_6011427_6012406
Length = 980
Score = 1060 bits (548), Expect = 0.0
Identities = 572/580 (98%)
Strand = Plus / Plus
Query: 1 ttggaataagaatgtataatcagaacacccatcccgtgactcaggattgtcagagcaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggaataagaatgtataatcagaacacccatcccgtgactcaggattgtcagagcaaaa 260
Query: 61 gcaaatacagtcacaatgtcctctcaggttgccaaaacacatagacaatcatcgagaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gcaaatacagtcacaatgtcctctcaggttgccaaaacacatagacaatcatcaagaagt 320
Query: 121 tggcactatcaacagtgaagggaaatactccaaacacatgcactttaaaacaaaatcaag 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 tggcactatcaacagtgaagggaaatactccaaacatatgcactttaaaacaaaatcaag 380
Query: 181 gagagatcttttaagtagagtattttaatgtaataatgttaacaggaaaaaattaaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagagatcttttaagtagagtattttaatgtaataatgttaacaggaaaaaattaaaaat 440
Query: 241 aataatgtgtagcaaaggcatctatagttatggggttgggaaggtgtcctgtgttttaaa 300
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||
Sbjct: 441 aataatgtgtagcaaaggcatctacagttatggggttgggaaggtgccctgtgtgttaaa 500
Query: 301 atgtttgctatgcaggtatgaggacctgagttcaaatctatacacacgtgtaaatatatg 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 atgtttgctatgcaggtatgaggacctgagttcaaatctatacacatgtgtaaatatatg 560
Query: 361 aacacagcaatgtaggtctgtaatcagcatcccagcataaggtaagtgacaggaaagtcc 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacacaacaatgtaggtctgtaatcagcatcccagcataaggtaagtgacaggaaagtcc 620
Query: 421 tggggtttctctggtcagccagtttatgctggattggtaaatcgcagatttagtggtaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggggtttctctggtcagccagtttatgctggattggtaaatcgcagatttagtggtaga 680
Query: 481 ccctatctcaaaaaataaggtagagaacaactacgtcagatgcccaatttctcatccccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccctatctcaaaaaataaggtagagaacaactacgtcagatgcccaatttctcatccccc 740
Query: 541 caacaacaacaacaacacacatactcagagagagaaagag 580
|||||||||||||||||||||||| |||||||||||||||
Sbjct: 741 caacaacaacaacaacacacatacacagagagagaaagag 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
