BAC Information

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BAC

Clone NameMSMg01-439F04
Chromosome13 (Build37)
Map Location 80,582,589 - 80,583,060
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439F04.T7 (MSMg01no439_f04.b1)MSMg01-439F04.TJ (MSMg01no439_f04.g1)
ACCAG529705AG529706
length743730
length of high quality
(start - end)
501 (47 - 547)471 (77 - 547)
definitionCHROMAT_FILE: MSMg01no439_f04.b1 PHD_FILE: MSMg01no439_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:25 2005CHROMAT_FILE: MSMg01no439_f04.g1 PHD_FILE: MSMg01no439_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTGTTGTAACTCACATGTGTGTAGAAGTATATATATATATATATATT
TCCAAATACAAATATACAACTTGCTAAGTCTGTGTAAACTTATTTGTATG
TATATGTTGTCAGCGATGACAATTTGCTATTGCCTAATTGGTCATATTAA
AAAGATGGACTCCACATCGTCATCATGAATCTTAGATTTTGCAATGCACA
TTAAACTCTCTGGTGGCTAGTTTGTCAACTTGAGGTGGTTGAGAGGAGAG
AATCTCAACTGAGGAACTGGATCCATCAGATTGACTTATGGACATGACAT
GTCTATGGAACATTTTCTTGACTGTTAATTGATGTAGGAGTCCCCAGGCC
ACTGTGGGCAGTGTCACTCTTAGACACTCAGGGCCATATCAGAAAGGAAA
ATAAACTTAATCTTGGTACCAAATCAGTAAACATTTCTCCTCCATGGTCT
CTGCTTCAGTTCCTACTTTCAGATTCCCATGTGAGATCCTTTCTAGGGCC
CTCTATGTAAACTGAGTGCCTTTTGAACTTGCTTCTTGGTTATGTTAAAA
ACAGCACCAGTGAAGCAGTGTCGAAATACAAAAAAACACCCCTGCAAGCT
GAAGCCCTATCCACCCTCTTTAATTTCATCTCCCCCCTCCTTTAATCTTC
TACGCCACTTTTTCCTTTTTTTCCTAATCCCCTTCTTCTCTCN
TGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCATACTATCTCTGTCTATGCAG
ATCATCATTCAACTTTTAGATGAACTTTAAAGACTTCTCTAACATTATGG
TAACTCTCTTCTCATTACTACATGATCCCAAGGTTGTTCGAGCCTCCATC
ACACTGAGCTGCCCTCAAAGGTTGGGCAGCTCAATTAAAAAAAATAACAA
AAATGATTTGAGTCGAGTTACTGATTCAAAGGAATAATCAGAATGTTATT
GGATTTGTAATAAGATGACTCAGGTTAGAAATAGTACTTAATGGAGAAAT
GTCCTTAAGTTAAAAAATGAAAGGTGAATAGATGTTAACAACCGGAAGTC
AGATGTTGTGACGCAGGGAAAAGGAAGAGATTAAGTAGTTGAAAATAAAT
TATATTGCCAGAGTAGAGTGAGTAAAAAGCATATAGCAGCACAAAAAGGT
CTGGATTTAATGTTAACTGCGTAGTCTTCACATACTACAATTTGGGTCAT
CTCATAATATATTCACTCTTCCTTCGGTAACAAAATGTTTCATTCTAACT
GAACATATTGCCACCTACAATAAATATTACTCTCTTTCCAGTTTTTCCGC
CGGCTAAGCCCAACTTTATAAATAATCTCCAGGTCACGGACCATAAGTTT
CGACACATGGTTTTTTTACCCCTTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_f04.g1 MSMg01no439_f04.g1 CHROMAT_FILE:
MSMg01no439_f04.g1 PHD_FILE: MSMg01no439_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:25 2005
         (471 letters)



>mm_chr13_80582389_80583260
          Length = 872

 Score =  820 bits (424), Expect = 0.0
 Identities = 460/472 (97%), Gaps = 1/472 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcatactatctctgtctatgcagatcatcattcaacttttagatgaactttaaagactt 60
           |||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 672 ctcatactgtctctgtctatgcacatcatcattcaacttttagttgaactttaaagactt 613

                                                                       
Query: 61  ctctaacattatggtaactctcttctcattactacatgatcccaaggttgttcgagcctc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 612 ctctaacattatggtaactctcttctcattactacatgatcccaaggttgtttgagcctc 553

                                                                       
Query: 121 catcacactgagctgccctcaaaggttgggcagctcaatt-aaaaaaaataacaaaaatg 179
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 552 catcacactgagctgccctcaaaggttgggcagctcaattaaaaaaaaataacaaaaatg 493

                                                                       
Query: 180 atttgagtcgagttactgattcaaaggaataatcagaatgttattggatttgtaataaga 239
           ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 492 atttgagtcaagttactgattcaaaggaataatcaaaatgttattggatttgtaataaga 433

                                                                       
Query: 240 tgactcaggttagaaatagtacttaatggagaaatgtccttaagttaaaaaatgaaaggt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgactcaggttagaaatagtacttaatggagaaatgtccttaagttaaaaaatgaaaggt 373

                                                                       
Query: 300 gaatagatgttaacaaccggaagtcagatgttgtgacgcagggaaaaggaagagattaag 359
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gaatagatgttaacaactggaagtcagatgttgtgacgcagggaaaaggaagagattaag 313

                                                                       
Query: 360 tagttgaaaataaattatattgccagagtagagtgagtaaaaagcatatagcagcacaaa 419
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 312 tagttgaaaataaattatattgccagagtagagtgagtaaaaagcacatagcagcacaga 253

                                                               
Query: 420 aaggtctggatttaatgttaactgcgtagtcttcacatactacaatttgggt 471
           |||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 252 aaggtctggatttaatattaactgtgtagtcttcacatactacaatttgggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 872
Length adjustment: 10
Effective length of query: 461
Effective length of database: 862
Effective search space:   397382
Effective search space used:   397382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)