BAC Information

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BAC

Clone NameMSMg01-439G24
Chromosome13 (Build37)
Map Location 93,541,809 - 93,542,198
singlet/doubletsinglet
Overlap geneThbs4
Upstream geneRasgrf2, Msh3, Dhfr, 6430502M16Rik, 4930405M20Rik, Zfyve16, LOC100039070, Spz1, Serinc5, Ppia-ps13_1124.1
Downstream geneEG624619, EG218444, Papd4, LOC100039163, Homer1, Jmy, EG619883, Bhmt, Bhmt2, Dmgdh, Arsb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439G24.T7 (MSMg01no439_g24.b1)MSMg01-439G24.TJ (MSMg01no439_g24.g1)
ACCAG529791AG529792
length807755
length of high quality
(start - end)		402 (44 - 445)419 (73 - 491)
definitionCHROMAT_FILE: MSMg01no439_g24.b1 PHD_FILE: MSMg01no439_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:33 2005CHROMAT_FILE: MSMg01no439_g24.g1 PHD_FILE: MSMg01no439_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAACCCTAATTGTGTGTTATATATGTGTGTATGAAGGAGTAACTTC
ACTAAAACTTTATAATAAATTTTAATGAATTGCCAAGTTCAGTAGAAATC
AAGAAAGTATTATTTCTAGGGCTATAAGGGATGTCAGTGCCATGCCAGCA
CAGGACATCAGGAGTAAGGGCTTTCAATGTGTACATGAAGGTAGTGGACA
TGAGAGTTTGGAGATCTAGTATGTGTGTATGTATCCTATGTAAAGCCAGG
ATCCTTAGAGAACTTCCCTTTCCACAACACAGAGATGGAAAAAAAAAAAA
AACATCAGTACCTCAAAGGAGCAAGAAAGTTTGTTTGACTGGTTTGTCTA
CCACTCAACACAGAACCAAGTTCACACCATTTAGTTATAAATTCCAAGTC
TGTGTTATCAGTAAAACGTACCTATTTTGCATAAAACCCTTTCCTAAAAG
AGTTACTTTTGCTGAGGCCTAGCCAATCACATATGTCCGCGGTGTGGCGA
AAAACCCCCAAACCAGGCCCCTCCATGCGCACCGGGGAAAATTAATGGTT
TCTGGTGAAGAAATTGTGTAAAAGGAAATTTTTTTAACCTCCTCCCGCCC
TTTAAAAGGGGCCGGGGGTGGTGCTAAATAAAACGGGTTTTGCTCCGGAA
AAAAAACTCACCCTTGCCAAGTTTCTCTTTATATTTTAGCATTCTCCCCG
CCGGTTTGTCTCCCCTTTTTCAACAATTTTTCTTCCCCTCTATATTTCCT
CCCCTTG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATTTCACTCAAATACTTTTAGGAAG
AACGTTTTTAGAGATGGTCTTAGTTGCTAGGAAGATGTAATTAAAGTTAG
AATCAAGGATAGAATGTGCCCACTCCTCAGAATAGTAAGTAAAGGCTGCA
TAATAAGACATACAATGAGCTTTCATAAGTACATTAAAAAGAGAAATAGG
CTTGGGATAATTTTGTGCTCAAGGGAAAACATTTAAGTCCAAGGATAAAA
TCACAGGTGTGCACTAGCATATTGTAAGGCCATGTAAAACTATTACTTTG
GATTTTTAATGAGCTTATACAATGAAACACTGCTTTGAACTTAATATCGA
CATCCTTCTGTAACTCCCATTCTGTGTAAAATTTTATCTCTGGGGTAATT
TTCTAAAGAACTTTTTATCTAAAAAGGTATAAAAGACTCAGGGAGCTTTG
CCTCATCCATCCACCCATCCATCGAAATGTATATGTCTGTTTGTATGCCT
GTGCATAAATATATTGTGCATGTTTGTAACCCCGTTTGCATACTTGTTTT
AGCTGATTGTTCACGAACCCACCCCTTATTGCGGCTTGCCCACTTGTTTT
TTTTTTTTTTTCCCCTTCCTTTTCTTGCCCCATTTCTTTTCCTCTCCTCT
TTTCCTTCCTTTTTCTTTCCCCCCTTGCTCTCCTCCTTTATCTTTTTCTC
CTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_g24.b1 MSMg01no439_g24.b1 CHROMAT_FILE:
MSMg01no439_g24.b1 PHD_FILE: MSMg01no439_g24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:33 2005
         (402 letters)



>mm_chr13_93541696_93542496
          Length = 801

 Score =  690 bits (357), Expect = 0.0
 Identities = 385/399 (96%), Gaps = 10/399 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaaccctaattgtgtgttatatatgtgtgtatgaaggagtaacttcactaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 503 gaattccaaaccctaattgtgtgttatatatgtgtgtatgaaggagtcacttcactaaaa 444

                                                                       
Query: 65  ctttataataaattttaatgaattgccaagttcagtagaaatc-aagaaagtattatttc 123
           |  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 443 c--tataataaattttaatgaattgccaagttcagtagaaatcaaagaaagtattatttc 386

                                                                       
Query: 124 tagggctataagggatgtcagtgccatgccagcacaggacatcaggagtaagggctttca 183
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 tagggctataggggatgtcagtgccatgccagcacaggacatcaggagtaagggcattca 326

                                                                       
Query: 184 atgtgtacatgaaggtagtggacatgagagtttggagatctagtatgtgtgtatgtatcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtgtacatgaaggtagtggacatgagagtttggagatctagtatgtgtgtatgtatcc 266

                                                                       
Query: 244 tatgtaaagccaggatccttagagaacttccctttccacaacacagagatggaaaaaaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatgtaaagccaggatccttagagaacttccctttccacaacacagagatggaaaaaaaa 206

                                                                       
Query: 304 aaaaaacatcagtacctcaaaggagcaagaaagtttgtttgactggtttgtctaccactc 363
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 -------atcagtacctcaaaggagcaagaaagtttgtttgactggtttgtctaccactc 153

                                                  
Query: 364 aacacagaaccaagttcacaccatttagttataaattcc 402
           |||||||| ||||||||||||||||||||||||||||||
Sbjct: 152 aacacagagccaagttcacaccatttagttataaattcc 114


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 801
Length adjustment: 9
Effective length of query: 393
Effective length of database: 792
Effective search space:   311256
Effective search space used:   311256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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