BAC Information

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BAC

Clone NameMSMg01-439O21
Chromosome13 (Build37)
Map Location 111,201,685 - 111,370,426
singlet/doubletdoublet
Overlap genenone
Upstream genePde4d, LOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
Downstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439O21.T7 (MSMg01no439_o21.b1)MSMg01-439O21.TJ (MSMg01no439_o21.g1)
ACCAG530166AG530167
length777756
length of high quality
(start - end)		418 (70 - 487)453 (69 - 521)
definitionCHROMAT_FILE: MSMg01no439_o21.b1 PHD_FILE: MSMg01no439_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:11 2005CHROMAT_FILE: MSMg01no439_o21.g1 PHD_FILE: MSMg01no439_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,370,009 - 111,370,426)(111,201,685 - 111,202,137)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGA
ATTCAGTGCCTGTGTCCGTATGAGAACTTGGAGGGCAATAATGAAGAACA
TTAAATTATATTTGCAAGGGGAAATATTGAAGTTCAAGTTTTAGCGGTAG
AAATTAAGGCTGGCTGTTTTCATCAATATACTGAAATATGCCCCCAAAAT
GAGTGGCTTGAATCTTAAAATGGAAAAGGAACCCTGATGAGGGAGACCAG
TCTCCTTTCATCCCCATCTGTATGTCGTTCCCTTGTGTCTGATGATAGAG
GAGGTCCACTAGAAGCCTCCTGCTAGGGACTCCAGCAAAAGGAGCTAGTT
TAAGCCTAGTTCTTGGGGGTTGAACACAGCAGGGGAGGTCTCCTTTCACT
CTGCTAAACTTCCTGCTGTGTTGAGTAGAAAACCAAAACTCCAAAGTCTA
AAATCTTTCCAAAGAAATGCAGACTTCCTTTCGGGTCAGGGTCCACAGAG
ACAGCTCTGCCCACATCTATCATACACTGAAAGATACCTATAGGCTTCTT
CTGACATGTCAGTTCAAAAAACAATCTCCTGAAAGGGAAAAAACACGTAT
TCCTCCCAATGAAAAACCCCGGAAAAAAAGGTATTAAAACCCGGGCTGGT
TTATTGTTCCTAAAAAAAAAAATTCCCTCCGAAAAAGGGGGGTTCCCGCC
CCTTTATTTTTTCCCAATATTCCGCTTCATTATGATTATAACCCTCCGGG
CGGTCGCAAAAACAAAATCTCCTAATT

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTTTGTAGCCCTGTTGCATCAGTGCTAATCT
AAAGGGAAAGCACACCACGTGTGTACAGACATAGGCTTGTTCTGACACGA
GCCACTGTGAGACACAGAGTGGAGGGAATCTCATTGTAGGGCTGTGCTCT
TCTCTACTGGCTCCACCAAAATCGCTGTGGTTCACGTTAAAACATGGCAT
GCTTGTTTGAAAGAGGTATAGGATGGGTGAAAGGAAACCTTCCTGATAAC
TATGTGGAAGCCCATTGCTCACTTCATGAAATAAAAGCAACACAAAAGGT
ACAAAGAGCAATGAGCAAAGCATTGGGCAGATATCAGGAGGAAAAATTAA
TATTTTTTCAACCCATTGAGTCAGGCTTTCATGTTTGACAAAATAAATAA
AGTACTTTAAGATATATTTTATTGGTCTATCCCATAATCAGCTTCCAAAC
GCTGACACCTTTGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATA
TAGTTGTCTCTTGTGAGGATATGCCGGGGCCCTAACAAACACCAGAAGTG
TATGCTCCCAGTCCCCTATTGTATGGACCCCAGGGCTCCCTTGGGGGTAG
CTAGTAGAAGTTCTCCAGGCCTCCCTAGGGGTCTTGTCCCCCTATTAGCG
GGAACAATCCCTTGTAAATAACTCTGTCCCCCCGGGTTCTCTCCCCCCTT
CCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_o21.b1 MSMg01no439_o21.b1 CHROMAT_FILE:
MSMg01no439_o21.b1 PHD_FILE: MSMg01no439_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:11 2005
         (418 letters)



>mm_chr13_111369809_111370626
          Length = 818

 Score =  785 bits (406), Expect = 0.0
 Identities = 415/418 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagaacttggagggcaataatgaagaacattaaattatatttgcaaggggaaatattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atgagaacttggagggcaataatgaagaacattaaattatatttgcaaggggaaatattg 559

                                                                       
Query: 61  aagttcaagttttagcggtagaaattaaggctggctgttttcatcaatatactgaaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aagttcaagttttagcggtagaaattaaggctggctgttttcatcaatatactgaaatat 499

                                                                       
Query: 121 gcccccaaaatgagtggcttgaatcttaaaatggaaaaggaaccctgatgagggagacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gcccccaaaatgagtggcttgaatcttaaaatggaaaaggaaccctgatgagggagacca 439

                                                                       
Query: 181 gtctcctttcatccccatctgtatgtcgttcccttgtgtctgatgatagaggaggtccac 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 438 gtctcctttcatccccatctgtatgtcgttcccttgtgtctgatggtagaggaggtccac 379

                                                                       
Query: 241 tagaagcctcctgctagggactccagcaaaaggagctagtttaagcctagttcttggggg 300
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 378 tagaagcctcctgctagggactccagcaaaaggagctagtccaagcctagttcttggggg 319

                                                                       
Query: 301 ttgaacacagcaggggaggtctcctttcactctgctaaacttcctgctgtgttgagtaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttgaacacagcaggggaggtctcctttcactctgctaaacttcctgctgtgttgagtaga 259

                                                                     
Query: 361 aaaccaaaactccaaagtctaaaatctttccaaagaaatgcagacttcctttcgggtc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaaccaaaactccaaagtctaaaatctttccaaagaaatgcagacttcctttcgggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no439_o21.g1 MSMg01no439_o21.g1 CHROMAT_FILE:
MSMg01no439_o21.g1 PHD_FILE: MSMg01no439_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:11 2005
         (453 letters)



>mm_chr13_111201485_111202337
          Length = 853

 Score =  830 bits (429), Expect = 0.0
 Identities = 447/453 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttgtagccctgttgcatcagtgctaatctaaagggaaagcacaccacgtgtgtacag 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tttttgtagccctgttgcatcagtgctaatctaaaaggaaagcacaccacgtgtgtacag 260

                                                                       
Query: 61  acataggcttgttctgacacgagccactgtgagacacagagtggagggaatctcattgta 120
           |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 261 acataggcttgttctgacacgagccattgcgagacacagagtggagggaatctcattgta 320

                                                                       
Query: 121 gggctgtgctcttctctactggctccaccaaaatcgctgtggttcacgttaaaacatggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggctgtgctcttctctactggctccaccaaaatcgctgtggttcacgttaaaacatggc 380

                                                                       
Query: 181 atgcttgtttgaaagaggtataggatgggtgaaaggaaaccttcctgataactatgtgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcttgtttgaaagaggtataggatgggtgaaaggaaaccttcctgataactatgtgga 440

                                                                       
Query: 241 agcccattgctcacttcatgaaataaaagcaacacaaaaggtacaaagagcaatgagcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcccattgctcacttcatgaaataaaagcaacacaaaaggtacaaagagcaatgagcaa 500

                                                                       
Query: 301 agcattgggcagatatcaggaggaaaaattaatattttttcaacccattgagtcaggctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcattgggcagatatcaggaggaaaaattaatattttttcaacccattgagtcaggctt 560

                                                                       
Query: 361 tcatgtttgacaaaataaataaagtactttaagatatattttattggtctatcccataat 420
           |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 561 tcatgtttgacaaaataaataaagtactttaagatatattttattgatccatcccataat 620

                                            
Query: 421 cagcttccaaacgctgacacctttgcatacact 453
           ||||||||||| |||||||||||||||||||||
Sbjct: 621 cagcttccaaatgctgacacctttgcatacact 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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