BAC Information

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BAC

Clone NameMSMg01-440H15
Chromosome13 (Build37)
Map Location 115,097,874 - 115,098,109
singlet/doubletsinglet
Overlap geneNdufs4
Upstream geneBC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik
Downstream geneLOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440H15.T7 (MSMg01no440_h15.b1)MSMg01-440H15.TJ (MSMg01no440_h15.g1)
ACCAG530584AG530585
length740721
length of high quality
(start - end)		499 (82 - 580)257 (74 - 330)
definitionCHROMAT_FILE: MSMg01no440_h15.b1 PHD_FILE: MSMg01no440_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:56 2005CHROMAT_FILE: MSMg01no440_h15.g1 PHD_FILE: MSMg01no440_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXCGTCANGAGGA
TGCGCGGAATTCTGTGTCTTTCTTAAAGAGATTGCTGAAAACTGTTGCCT
CTAAGAGAGGGCTATGAATTCAACCATGGGAAAGCTCTTCTTCGTATAAG
TAGCCTAAATTTTTTTAATTAGGTATTTTCCTCATTTACATTCCCAATGC
TATCCCGAAAGTCCCCCATACCCACCCCCCACTCCCCTACCCACCCACTC
CCCCTTTTTGGCCCTGGCGTTCCCTTATACTGGGGCATATAAAGTTTGCA
AGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGA
TACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTAGTTAGTTCATATT
GTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGTTCCTTGGGTGCTTTC
TCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGAGC
ATCCACTTCTGTGTTTGCTAGACAGCATAGTCTCACAAGGGACAGCTATA
TCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTATCAGCGT
TTGGAAGCTGATTATGGGATGGATCCCTGGATATGGCAATCACTAGATGG
GCCATCCCTTTGCCACAGGTCCCAATTTTGTCTCTGTAACTCCTTCCCAA
AAATTAGGATACCCCCGATATAAGATACCCTTTGCTAAAC

GATTNCCGATGAAGTGGGAGGCCTGGGGGCGCCTGGCTCAGTATATGCGT
GAACTATAGAAGTTTCGCGAAATCTTTCTTCTAGCGCTGACCCCCTCTCC
AAATGGTTCTGACCTTCAGTGCCAAAGAAGATGCAATTGCCTTTGCAGAA
AAAAACGGTATGACTCAGCCACCTGCCTGCCCCTCCTCCCTCCCTCTTTG
CCTCCCTCATTCTCTTCCTTCATTTCTTCCTTCCCTTCTCCCCTTCCTAC
CTCTGTCCCTCCCTCCCTTCCTTCTTCCTACATCAAGATAAGATTTTGGG
GGGTTTTTTTGGTTGGGTTGGGTTTTTTTGNNNNNNNNNNNNNNNNNNNN
NNNNNTTTTTTTTTTTTTNNTNTTTNTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTNNNNNNNNNNTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTT
TTNTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTT
NTTTNTTTTTTTTTTTTTTNTTTTTTTTTTNTTTTTTTTTTTTTNNTTTT
TTTTTTNTTTTTTTTTTTTTTTTTTTTTNTTTTTTTNTTTTTTTTTTTTT
TTNTTTTTTTTNTTTTTTTTTTNNNNTTTTTNNTTNTTNNTTTTTTTTTT
TTTTTNTNTTTTTTNNTNTNNNTTTTTTTTNTTTTTTNTTTTTTTTTTTT
TTTTTTTTNTTTTTNTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_h15.g1 MSMg01no440_h15.g1 CHROMAT_FILE:
MSMg01no440_h15.g1 PHD_FILE: MSMg01no440_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:56 2005
         (257 letters)



>mm_chr13_115097803_115098460
          Length = 658

 Score =  433 bits (224), Expect = e-126
 Identities = 234/238 (98%), Gaps = 3/238 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttcttctagcgctgaccccctctccaa-atggttctgaccttcagtgccaaagaagat 59
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 307 ctttcttctagcgctgaccccctctccaacatggttctgaccttcagtgccaaagaagat 248

                                                                       
Query: 60  gcaattgcctttgcagaaaaaaacggtatgactcagccacctgcctgcccctcctccctc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gcaattgcctttgcagaaaaaaacggtatgactcagccacctgcctgcccctcctccctc 188

                                                                       
Query: 120 cctctttgcctccctcattctcttccttcatttcttccttcccttctccccttcctacct 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 187 cctctttgcctccctcattctcttccttcatttcttccttcccttctccccttcctccct 128

                                                                     
Query: 180 ctgtccctccctcccttccttcttcctacatcaagataagattttggggggttttttt 237
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 127 ctgtccctccctcccttccttcttcctacatcaagataagattttgggg--ttttttt 72


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 658
Length adjustment: 9
Effective length of query: 248
Effective length of database: 649
Effective search space:   160952
Effective search space used:   160952
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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