BAC Information

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BAC

Clone NameMSMg01-440L14
Chromosome13 (Build37)
Map Location 65,291,858 - 65,292,462
singlet/doubletsinglet
Overlap geneNlrp4f
Upstream geneCdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466
Downstream geneENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440L14.T7 (MSMg01no440_l14.b1)MSMg01-440L14.TJ (MSMg01no440_l14.g1)
ACCAG530772AG530773
length745732
length of high quality
(start - end)		542 (54 - 595)592 (83 - 674)
definitionCHROMAT_FILE: MSMg01no440_l14.b1 PHD_FILE: MSMg01no440_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:16 2005CHROMAT_FILE: MSMg01no440_l14.g1 PHD_FILE: MSMg01no440_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:16 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNAAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTGTGTTTCCTTCCTAAGAAGGTAGGTGAAATTTATT
TGAGATAGCAAAAGGCTCTATGGCTATTTGAAGAAGATGGTATGATACCT
AGATGCTTTATTAGCACCTAACCTAAAGTACAGATCATAGTATTCCCTTT
TGTCTGGGAGGACCATCATGAAAATACATGTAAATGAGCAAGTTGGCACA
TCCTATCCTCCAGCTAGAGTGCTGATTACATTGTAATAAACTACTGAAAA
TGTGCTTCAAATACTCACCCAGAAACAATTTTTCTTTTAAAATTAAAGAC
TGTGAAAACTTTTTACATTTAATTTTTATTTTAAATCTTTTATTTTTAAA
ATGTATTTATATATGATATGATATAACCATTAAATTAAATTATTTATAAA
GTTCTTATAAATTTTTTCTAATAAAATAATCATCACACATGAACATTTGA
TTAGAGGAGATTTACTTTACACATTACAGCACCTTTCTTAGAGTTAGTCT
TTCATCATCATCTCAATGCTGTCTTCCACTTGTGTTCTACCTAAGGTGTC
CTGGACACAAAGTAACACTAATAGACTTCTCTAGGAATGCTGCCCCTTAT
TCGACTATTTTAACCGAAAAAAAAGTTTATTAAGAAGGAATTAAACAGGG
GAAAGGAATCTTTTATAAAGGGGGAAGAAAATATAATTAAAGATC

AATTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGAAACATATTGAGGC
AATGTTGGCTGTCACATGAGGAAGCTACTGGCATCTAGAAAGCAGAACCC
TGCACATGCTCTCAACATCCTAAAATTCATGGGCCAGCCCTCAAAAAAGA
ATGGTCAGAAATAGACATTACAGGTGTCAAGACAGTAAGATTCCACTTTA
GACTACATAAACCTTCATTTATGCAGTTAGCTGAGAGATGTTGGGAAGGC
TAGTCTGTTATTTCAGTGATCTGACTAAATCTATTTCTACTTTTAACTTA
CACAAGTTTGTTAAGGGTGAAGCTGGGGTATTTCAGATATTCATACAAGA
TTCGAATGGCTGGCTCATTGAAACTAGTGTCTTTTATTTGGAGTACCTGG
ATGTCTTTACTCCTTACAAATACAGAGCACATATCATTCCAACAGATGAG
TAGTTTTTTCCTGTTACAGAAGAGAAAGGAATTGTTAGAAGTTAATTCAA
GGGGGCGGAGAGATGGCTCAGTGGTTAAGACCATTTACTATTCTTGAAGA
CCTGAGGCCAGTTTCCAGCACCAATGTGGTGGTTCACAACCATCTGGAAC
ACCAATTCCTAGGTTATCTGACACCTCTTTCACCCACCATGGGCATGCAT
ACCATGTACATGCACACATGTAGGCAAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_l14.g1 MSMg01no440_l14.g1 CHROMAT_FILE:
MSMg01no440_l14.g1 PHD_FILE: MSMg01no440_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:16 2005
         (592 letters)



>mm_chr13_65291658_65292649
          Length = 992

 Score =  632 bits (327), Expect = 0.0
 Identities = 532/607 (87%), Gaps = 17/607 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagaaacatattgaggcaatgttggctgtcacatgaggaagctactggcatctagaaag 60
           |||||||||||||||||||| ||||||  ||||||||||||||||||||||| |||||||
Sbjct: 201 tgagaaacatattgaggcaaggttggccatcacatgaggaagctactggcatttagaaag 260

                                                                       
Query: 61  cagaaccctgcacatgctctcaacatcctaaaattcatgggccagccctcaaaaaagaat 120
           |||| |||||||| |||| ||| |||| |||| |||||||||||  ||||||  ||||||
Sbjct: 261 cagagccctgcacgtgctttcatcatcataaacttcatgggccatacctcaatgaagaat 320

                                                                       
Query: 121 ggtcagaaatagacattacaggtgtcaagacagtaagattccactttagactacataaac 180
           |||||| | ||||||||| | |||||||||||| ||||||||||||||||||| || | |
Sbjct: 321 ggtcagcagtagacattagaagtgtcaagacagaaagattccactttagactatatcagc 380

                                                                       
Query: 181 cttcatttatgcagttagctgagagatgttgggaaggctagtctgttatttcagt-gatc 239
           |||||| ||||||||||||||||||||||||||||||||||||||||| ||| || ||| 
Sbjct: 381 cttcatctatgcagttagctgagagatgttgggaaggctagtctgttaattc-gttgata 439

                                                                       
Query: 240 tgactaaatctatttctacttttaacttacacaagtttgttaagggtgaagctggggtat 299
           |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 440 tgactaaatcaaagtctacttttaacttacacaagtttgttaagggtgaagctggggtac 499

                                                                       
Query: 300 ttcagatattcatacaagattcgaatggctggctcattgaaactagtgtcttttatttgg 359
           |||||| ||||||| || | |||||||||||||||||||||| |||||||||||||| ||
Sbjct: 500 ttcagagattcatataaaactcgaatggctggctcattgaaattagtgtcttttattcgg 559

                                                                       
Query: 360 agtacctggatgtctttactccttacaaatacagagcacatatcattccaacagatgagt 419
           ||| |||| |||||||||||||||||||| ||||||||||||| |||||||||||| |||
Sbjct: 560 agttcctgaatgtctttactccttacaaacacagagcacatattattccaacagataagt 619

                                                                       
Query: 420 agttttttcctgttacagaagagaaaggaat---------tgttagaa-gttaattcaag 469
           || | || ||||||||||| |||||||||||         |||||||| |||||||||||
Sbjct: 620 agctcttccctgttacagaggagaaaggaatatattgcattgttagaaagttaattcaag 679

                                                                       
Query: 470 ggggcggagagatggctcagtggttaagaccatttactattcttgaaga---cctgaggc 526
           |||  |||| ||||||||||||||||||||| |||||| || |||||||   ||  ||||
Sbjct: 680 gggatggagggatggctcagtggttaagaccttttactctttttgaagaagacccaaggc 739

                                                                       
Query: 527 cagtttccagcaccaatgtggtggttcacaaccatctggaacaccaatt-cctaggttat 585
           ||||||||||||| || |||||||||||||| |||||| |||||||||| ||  ||||||
Sbjct: 740 cagtttccagcactaacgtggtggttcacaaacatctgtaacaccaatttccg-ggttat 798

                  
Query: 586 ctgacac 592
            ||||||
Sbjct: 799 ttgacac 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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