BAC Information

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BAC

Clone NameMSMg01-440N08
Chromosome13 (Build37)
Map Location 117,264,994 - 117,436,894
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC547402, LOC100041045, EG623174, Isl1, EG668276, Gm280
Downstream geneLOC100041169, Parp8, LOC668288, LOC623312, Emb, EG623365, LOC382807, Hcn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440N08.T7 (MSMg01no440_n08.b1)MSMg01-440N08.TJ (MSMg01no440_n08.g1)
ACCAG530856AG530857
length810766
length of high quality
(start - end)		388 (45 - 432)459 (83 - 541)
definitionCHROMAT_FILE: MSMg01no440_n08.b1 PHD_FILE: MSMg01no440_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:25 2005CHROMAT_FILE: MSMg01no440_n08.g1 PHD_FILE: MSMg01no440_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,436,518 - 117,436,894)(117,264,994 - 117,265,452)
sequence
TTTGCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAT
CCGCGGAATTCAAATGAGTTACAGAAAGAAATGAACTTGTTGGAACTGGA
AGAAAATTGAGGCACAAAACAAAGAGAGTGGAGGTCATAGTCTGGAGACA
AAACCCAAGTGTGGTGAGCAGTTACCAAGGTTAGTGGATGTGAGTAGTGG
GCCTGGCAGAGGGACGGGACACCCAACTGTCAGGTTGAGCATCTCTGAGC
TTTGTGGTTTAAAGGAAAAATTTCAAATGATGGGAACATGAAAGAGCTTT
GTATATGTGAGTTTTAGAGCATAATGAAGGTGACAGTCAGACTCATGGGA
AAATGGCCGTGAATTCAAGGTCTAGGATGCTGAAAACATGATCGATTATA
ATGATGAAAGTGGCCATGGGGACAATTGGAGGTGGGATCTATGATACAAG
TTGGAAAACATTTAGGGGAGGCTAGAAATGTAAGGCTTTGTGTTATTATG
TTCTTTTTTCCCCCCCTACTTTTTTTCTTCTTTTTTCTTTTTTTCTGCTC
TTTTTCCTTTTATACTTTTTCTCTTTCTTTTTTTCTTTCTTCTCTCTATT
TTCTTCCTCTTTTCTCGTTATGCTCTTTTCTTTTCTTTCCTAAATCTTCT
GTTTTTTTTCTTATTTCTTTTCTCTTCTCTCTTGATTACTCTTTCATTTA
TTCTTTCGACTTTTCTCTCATATTTCACTCTCTTTTTCTCATCCCTTCTA
TCTTATTCTCTCTTTCTTTTGTTCCTTCTTCTTCCATTCACTATTCTTTT
TTATTTTCTT

NNNNCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGCTGACTACCACAA
AGCACAGCAGGCTTTGTAAGAGAGTGCTGGATTAACCATCTAAACAGCCA
TTCTGCCACGTGAATGTGAGATTCCTGGAATATTCCAGAAAGGCTCTCTG
TGAATTATCTGATCAATATGTTTTACTCAACTTCCAGTTTAAACTCAATT
TTTATATTTGATGACTGTGGATGATGCATGTCAGAGCATTCTGGTGCAAC
TACAGTCATGCCAGACTTCTTATATTTTAAATTTTATTTTGTATTTTAAA
ACATTTTTATTATTTGCTTGTACTTATGTAGTTCTTTTTAGCACCTAAAT
ATTTTAAGTTATATTAATAAAATTATTCGTTTCCTCAAAAGTGTATGTGT
GTTACTTAACTGCAATTTTAAAATCTTAATGAAATGACATAAAATAATTT
CTGACTTTATATGTATATGATAGTAATGAAGTCTGACACAGTTCTACACC
AGTACAAAATGACTCCTTGAAAATTTGACCTGTCCTTTATGATTCAAGCC
CAATTGATTGAAAGTTACAGCTTCCGTTAATCTGGCTAAAAGCTATTTTC
CGGTGTGGAGAAATTTCTTTTATAAAATATTACACCACCCCCTTAAAATA
TAGGGTAAAGAACCCATTTTTATGTGTTAAAAACTTCTACCCCTTTTTTA
CTCCTCTACCTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_n08.b1 MSMg01no440_n08.b1 CHROMAT_FILE:
MSMg01no440_n08.b1 PHD_FILE: MSMg01no440_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:25 2005
         (388 letters)



>mm_chr13_117436307_117437094
          Length = 788

 Score =  683 bits (353), Expect = 0.0
 Identities = 371/377 (98%)
 Strand = Plus / Minus

                                                                       
Query: 12  gaattcaaatgagttacagaaagaaatgaacttgttggaactggaagaaaattgaggcac 71
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaattcaaatgaggaagagaaagaaatgaacttgttggaactggaagaaaattgaggcac 529

                                                                       
Query: 72  aaaacaaagagagtggaggtcatagtctggagacaaaacccaagtgtggtgagcagttac 131
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aaaacaaagagagtggaggacatagtctggagacaaaacccaagtgtggtgagcagttac 469

                                                                       
Query: 132 caaggttagtggatgtgagtagtgggcctggcagagggacgggacacccaactgtcaggt 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 caaggttagtggatgtgagtagtgggcctggcagagggacgggacacccaactgtcaggt 409

                                                                       
Query: 192 tgagcatctctgagctttgtggtttaaaggaaaaatttcaaatgatgggaacatgaaaga 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgagcatctctgagctttgtggtttaaaggaaaaatttcaaatgatgggaacatgaaaga 349

                                                                       
Query: 252 gctttgtatatgtgagttttagagcataatgaaggtgacagtcagactcatgggaaaatg 311
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 348 gctttgtatatgtgagttttagagcacaatgaaggtgacagtcagactcatgggaaaatg 289

                                                                       
Query: 312 gccgtgaattcaaggtctaggatgctgaaaacatgatcgattataatgatgaaagtggcc 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 288 gccgtgaattcaaggtctaggatgctgaaaacatgatcgattataatgatgaaagcggcc 229

                            
Query: 372 atggggacaattggagg 388
           |||||||||||||||||
Sbjct: 228 atggggacaattggagg 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no440_n08.g1 MSMg01no440_n08.g1 CHROMAT_FILE:
MSMg01no440_n08.g1 PHD_FILE: MSMg01no440_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:25 2005
         (459 letters)



>mm_chr13_117264794_117265652
          Length = 859

 Score =  872 bits (451), Expect = 0.0
 Identities = 457/459 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtagctgactaccacaaagcacagcaggctttgtaagagagtgctggattaaccatcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtagctgactaccacaaagcacagcaggctttgtaagagagtgctggattaaccatcta 260

                                                                       
Query: 61  aacagccattctgccacgtgaatgtgagattcctggaatattccagaaaggctctctgtg 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 aacagccattctgccacgtgaatgcgagattcctggaatattccagaaaggctctctgtg 320

                                                                       
Query: 121 aattatctgatcaatatgttttactcaacttccagtttaaactcaatttttatatttgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattatctgatcaatatgttttactcaacttccagtttaaactcaatttttatatttgat 380

                                                                       
Query: 181 gactgtggatgatgcatgtcagagcattctggtgcaactacagtcatgccagacttctta 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactgtggatgacgcatgtcagagcattctggtgcaactacagtcatgccagacttctta 440

                                                                       
Query: 241 tattttaaattttattttgtattttaaaacatttttattatttgcttgtacttatgtagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattttaaattttattttgtattttaaaacatttttattatttgcttgtacttatgtagt 500

                                                                       
Query: 301 tctttttagcacctaaatattttaagttatattaataaaattattcgtttcctcaaaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctttttagcacctaaatattttaagttatattaataaaattattcgtttcctcaaaagt 560

                                                                       
Query: 361 gtatgtgtgttacttaactgcaattttaaaatcttaatgaaatgacataaaataatttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtatgtgtgttacttaactgcaattttaaaatcttaatgaaatgacataaaataatttct 620

                                                  
Query: 421 gactttatatgtatatgatagtaatgaagtctgacacag 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gactttatatgtatatgatagtaatgaagtctgacacag 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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