BAC Information

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BAC

Clone NameMSMg01-443H05
Chromosome13 (Build37)
Map Location 57,836,340 - 57,836,566
singlet/doubletsinglet
Overlap geneSpock1
Upstream geneSmad5, EG627415, Trpc7, LOC100040995
Downstream geneKlhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443H05.T7 (MSMg01no443_h05.b1)MSMg01-443H05.TJ (MSMg01no443_h05.g1)
ACCAG532854AG532855
length744763
length of high quality
(start - end)
244 (75 - 318)239 (77 - 315)
definitionCHROMAT_FILE: MSMg01no443_h05.b1 PHD_FILE: MSMg01no443_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:03 2005CHROMAT_FILE: MSMg01no443_h05.g1 PHD_FILE: MSMg01no443_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTATCTTAATTTGCGGCGCTAATACGAATACTATTTTCAGAAGACCGCG
GAATTCTTCGGGTTACGAACGAGCATGCCTTTAGGGGCTACGTCTGGTCT
CTAGTCTCATTCTCCCTCAGTGACTTCCGGGTTGTCCTGAGGTGAACAGC
TCCTCTCTGTCCTTCCACCCCGATATTTCTGCCCTGACACAGCCCCAAAC
ACAGTGCAGCCTGTCGTTTGTGGACAGATGTGAGCCCAGTTAATCTTTCC
TCCTTGAAGCTGATCTTCCTAGGGACTTGGTTAGTGTCCCATTAGCTGAG
TAGCCCGAGGCTGCATTTTACTCTTTAAGAGGCCTGACAAGAATGGCTGT
GGCGGAGGGGTTTTCACAGCAAGGCTCTTTGATTCCATTGAAACATCTAG
TGAGTGTGCCCAGTGATCCTCATGTTCCCTATGCCCTGACGTCCTGGCGC
TTTTTGTCTTCTACTCTTCTCCTGAACCGCATTCTCTTTTTTATCGCCTC
CTATTTCCTCTCCTTCGTGCCTCCACTTTGTTTCCAAAGTTCCGTATATT
TTTTCACCACCTTTCGTATTTTTTCCCCATTTTTTTTTTTTTTTTCCCCC
TCTCTTCTTTTTTTTTTACACCTCGCCCTTTTTTAATCGCCCTTTTCCCA
CCGGCTTCCCCCCTCTTTACCCTTTTTCCCCCTCTTATAGCTTACCCCAC
CCTTTTTCTTTTACTTTCCCTCTCCTTTTCCCCCCTATCTTCCG
TTTTTCCATGATACGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATCTGGCTTTGTCTTGTGATGGT
CTTACGAATGCTGCCCTGGCCACATGTATACAGCTGACCAGTCATGCCTG
CCTGACCGGTAGGTTTGTTACAGACATCTACCTCCCCAGGCTCTTACAAT
CTTTCTTCCAATTCCAACCATGATGATCCCTGACTCCTTGAAAGGAAGGA
GTATGATACAGACATCACACTCAGGGCTGAGCAAACCACAGTCTCTGAGT
CTCTGCACTTTGACAAGTTGTTTGTCTCCGTATTAATCACCCCTTAATAC
AAAGAGAAGTCTCTCTAGCGGATGTTGAGAAATGCTCTAAGCTACAGATA
TAATAACGTTTACTACTGTCCCAGTTACGGCTTCTAGCGCTGTGATGAAC
CATGCCTTCACTTCTAGTCTACCTTTTGATTCCCCCCCCTTCATATACTT
TACCTTTCTTTTTTTCTTCCATCCTTCTCCTTACCCTTTTTCCCCCGTTC
CCTTTTTTTTTTTCTTGGCCCTGTTCCCCTTGACCTTGCTTTCACCCCCC
CCTCTTATATTTATACCTCCCACCCCCTTTTCCTTCTCTTACTTTCCCCC
CTCTATCTTTAAATCCTTTTTTTCTCCTCTCCTCCCTTATCCCCTCCCCC
TTTTTACATATTGCCTTTTATTCTCTCTCACTTTACCCTCCACACCATTC
TCACTCTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_h05.b1 MSMg01no443_h05.b1 CHROMAT_FILE:
MSMg01no443_h05.b1 PHD_FILE: MSMg01no443_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:03 2005
         (244 letters)



>mm_chr13_57836062_57836705
          Length = 644

 Score =  373 bits (193), Expect = e-108
 Identities = 225/243 (92%), Gaps = 16/243 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcctttaggggctacgtctggtctctagtctcattctccctcagtgacttccgggttg 60
           ||||||||| |||||||||||||||||||||||||||||||||||||||||     | | 
Sbjct: 505 atgccttta-gggctacgtctggtctctagtctcattctccctcagtgact-----gct- 453

                                                                       
Query: 61  tcctgaggtgaacagctcctctctgtccttccaccccgatatttctgccctgacacagcc 120
           |||   ||      ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tcc---gg------gcttctctctgtccttccaccccgatatttctgccctgacacagcc 402

                                                                       
Query: 121 ccaaacacagtgcagcctgtcgtttgtggacagatgtgagcccagttaatctttcctcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ccaaacacagtgcagcctgtcgtttgtggacagatgtgagcccagttaatctttcctcct 342

                                                                       
Query: 181 tgaagctgatcttcctagggacttggttagtgtcccattagctgagtagcccgaggctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgaagctgatcttcctagggacttggttagtgtcccattagctgagtagcccgaggctgc 282

              
Query: 241 att 243
           |||
Sbjct: 281 att 279


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)