BAC Information

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BAC

Clone NameMSMg01-443J04
Chromosome13 (Build37)
Map Location 12,554,061 - 12,554,415
singlet/doubletsinglet
Overlap genenone
Upstream geneZp4, Ryr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900
Downstream geneEdaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443J04.T7 (MSMg01no443_j04.b1)MSMg01-443J04.TJ (MSMg01no443_j04.g1)
ACCAG532947AG532948
length733741
length of high quality
(start - end)
341 (55 - 395)387 (79 - 465)
definitionCHROMAT_FILE: MSMg01no443_j04.b1 PHD_FILE: MSMg01no443_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:12 2005CHROMAT_FILE: MSMg01no443_j04.g1 PHD_FILE: MSMg01no443_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCACCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGAGGAGC
CGCGGAATTCGGGGTCACTCCCGGACAGATACCTGATCTATACACTTAAA
GAATAATCGTGGGGGGTGTGGCCGGGGTACTCCTGGGTTTGCCTCCTTTG
CAGCCTTGGGTCAGAACTGAACAATGTTGTGAGCCAATCAGATTTAGCAG
CCACTCATTGCCAATAACTAGCCTTGTGTGTGGAGGAATTCGTTCTTCTT
TGTCCCTGCAAGAAACCCCATCCTGTGAGCAGTAGCCAGAACATGTCAAC
ACTGGGTGATTGACCGCTTATTCTGTGCTGTAGTTTACTACAGGGAACGC
TTCCTTAGGAAACAGTTTAGACACTGATGCTCAGTTCTGAGCAGAGCAGA
TGGCCAATAAGCACTGAGCTGCATAGTCAGGGCGCTGCACTGCTGACGGT
TTGCCCCGTATTTGTACGATCTAACTTAAATAAAACTGTAGGGCGCTGAG
AATGGCTGACTGAGCTACCTAGTTTTGATGTCCCAATGGTTTCCAGGTTA
TGCTCTCTTCTAGATATTAGCCATGCTCGCTTTTAACGCACCTGCTTTTA
CTTATCCTTATTGTCCCCTTTCCCCCGCGCCGTTTCTCCCCACCCCGCCC
TTCTAACCTTTCTTTTTTTCCCACACCATACCTTCTTTCCCCAACCTTTA
CGCTGTTACTGATTCCCTATTTCTTCCCCCCCC
TCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGCA
AGAAGGACACATGCTCCACTATGCTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCATATGCCCCTCATCAGAGGAATGGATACAGAA
AATGTGTTACATCTACCCCATGGAGTACTTACTCAGCTATTAATAAGAAA
GAACTTATGAAACTCCTATTCAAATGGATGGACCCGTATTTCATCTTTCT
GAGTGAGGGACACCCTCTACAAAATAACCCCCATCATATTGCACTCCCTG
TTTTAACGGCTAATACACTCCCAACCCCAGTATACCCCGGAATCTTCTAT
CTTTTTTTTTCCCGCCCTTCTTTCCCCCTTTTAATTAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_j04.b1 MSMg01no443_j04.b1 CHROMAT_FILE:
MSMg01no443_j04.b1 PHD_FILE: MSMg01no443_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:12 2005
         (341 letters)



>mm_chr13_12553875_12554615
          Length = 741

 Score =  598 bits (309), Expect = e-175
 Identities = 337/355 (94%), Gaps = 14/355 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattcggggtcactcccggacagatacctgatct--------------atacacttaaa 46
           ||||||||||||||||  |||||||||||||||||              |||||||||||
Sbjct: 187 gaattcggggtcactctgggacagatacctgatctcaagggtgttaaaaatacacttaaa 246

                                                                       
Query: 47  gaataatcgtggggggtgtggccggggtactcctgggtttgcctcctttgcagccttggg 106
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gaataatcgtggggggtgtggccggggtactcctgggtttgcctcctttgcagccttggg 306

                                                                       
Query: 107 tcagaactgaacaatgttgtgagccaatcagatttagcagccactcattgccaataacta 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tcagaactgaacaatgttgtgagccaatcagatttagcagccactcattgccaataacta 366

                                                                       
Query: 167 gccttgtgtgtggaggaattcgttcttctttgtccctgcaagaaaccccatcctgtgagc 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gccttgtgtgtggaggaattcgttcttctttgtccctgcaagaaaccccatcctgtgagc 426

                                                                       
Query: 227 agtagccagaacatgtcaacactgggtgattgaccgcttattctgtgctgtagtttacta 286
           |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 427 agtagccagaacatgtcaacactgggtgattggccgcttattctgtgctggagtttacta 486

                                                                  
Query: 287 cagggaacgcttccttaggaaacagtttagacactgatgctcagttctgagcaga 341
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cagggaacgcttccttaggaaacagtttagacactgatgctcagttctgagcaga 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)