BAC Information

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BAC

Clone NameMSMg01-443L05
Chromosome13 (Build37)
Map Location 12,646,334 - 12,646,577
singlet/doubletsinglet
Overlap genenone
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd
Downstream geneEro1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443L05.T7 (MSMg01no443_l05.b1)MSMg01-443L05.TJ (MSMg01no443_l05.g1)
ACCAG533044AG533045
length750775
length of high quality
(start - end)
246 (79 - 324)244 (76 - 319)
definitionCHROMAT_FILE: MSMg01no443_l05.b1 PHD_FILE: MSMg01no443_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:22 2005CHROMAT_FILE: MSMg01no443_l05.g1 PHD_FILE: MSMg01no443_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAACACAATAATTTGCGGCGCTATACGACNCCTATAGTTCAAAAATGCGC
GGAATTCTTTCCCTCTTACTGAGAATTCAGTTTGTCAGTCTTGATGGCAA
GAGCCCCTACTGGCTGAGCCACCTCACTGGCCCAAACCACATTTTTTTTT
TAAAGGGCAAGTTTTTGACAGGTGTAGTAGGATTACAGAATCCTAGCACT
TAGAAGGTAGATGCAGGAAGATCAGGAGTTCAAAGCCAACTGCAGGTACA
TGGTGAATTAAATGCCAGTCTAGGCTACCTGATACTCATATCTCAAAAGG
GAGGAGGCAACATGAATTTTTCTGTTCATGAACTCTATCTCAATAAAGCT
GTAACTTAAAAAAAAATGAGGGGGCTGGAGAGATGGCTCAACGTTTAAGA
GCACTGACCGCTGTTCTGATGGTCCTGAGTTCTAATCCCAGCAAGCGCAT
GTTGGCTCACAACTATCTGCAATGAGATCTGACGCCCTTTTCTGATGCAT
CTGAAGATAGCTACTGTGTACCTATATGCAATAATATATCTTTTGTATGG
ACCAAGCCTGTCCTTATCGAGCGGTCTTGATTTTTTTTCCCATTCAACCC
ATAATTGATGCGCTCCCAGCCATCCGGACAGCATTTTTTGTACCTTCTTC
CCCCCCCCCTCTACTCTTTTATTCTTCTCTTAAAAAATCTGCGAAGCCCT
TTATTAATTGTTCCTTTGCCCACACTCTATTTAGCCTGTGTGTCTCTTCC

TTCTCGATGCAGCGCGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGCTGGGTGTGGTAGTCTGTCTG
TAATCCTAGCTATTTAGAGGCTAAGGCAGACAGACATATCCCTGGAAATC
AGACATTTGGGAACAGTCGGGACATTGTTACCTGTCTCCAGGAGAAGATA
AAGTTCCCTCTGGAAGGTTCTGTCTTTCCAGGTTTGTGTATGCCGATTCA
GGAGATTTTGAGGACCAATCCCTTACTACGTCAGTAAAACTGGATCGTGA
CTCCAGCTTTTGGCAGACGCGTCATTGAGGATTTGTGGTGGATTCCATAA
GAATGGACCTATATGCTTATATATTTGCATGCTTAGTCCCCAGGGGGCAG
AGAAGGATTATGCGGTGCGCCTCCACCCCATTAGGCCTCTCTTTGTTTGT
ACATCCCCGTTCGCTTCTTTTTCTTTTCTCCTTTTTTTTCCCCCCCCCCC
TTTTTTTTCCTCTCCTTTCTTTCTTTTATTCCCTTCTTTTTCCCTTCCCC
TTTTTCTCCCTCTTCCCTTTTTTTTTTTTCTTTCTCCTTTTCCCATTTTA
CACTTTTTCCCCCTCCCCCTCTTTTTTTTATCTCTCCTTCCCCTTTTTCC
CCCCTTTTTATTTTCTCCTCTTCCCCTTTACCCCCTCCTTTCCCCTCTCC
CCCCCTCTTCCCCCCTCCCTTTTTCATCTCCCTTTTTTTCTCCCCCTTAC
CCTTCGCTCCCTTTCACTCTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_l05.g1 MSMg01no443_l05.g1 CHROMAT_FILE:
MSMg01no443_l05.g1 PHD_FILE: MSMg01no443_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:22 2005
         (244 letters)



>mm_chr13_12646134_12646777
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgctgggtgtggtagtctgtctgtaatcctagctatttagaggctaaggcagacagac 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgctgggtgtggtggtctgtctgtaatcctagctatttagaggctaaggcagacagac 260

                                                                       
Query: 61  atatccctggaaatcagacatttgggaacagtcgggacattgttacctgtctccaggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatccctggaaatcagacatttgggaacagtcgggacattgttacctgtctccaggaga 320

                                                                       
Query: 121 agataaagttccctctggaaggttctgtctttccaggtttgtgtatgccgattcaggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agataaagttccctctggaaggttctgtctttccaggtttgtgtatgccgattcaggaga 380

                                                                       
Query: 181 ttttgaggaccaatcccttactacgtcagtaaaactggatcgtgactccagcttttggca 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgaggaccaatcccttactaagtcagtaaaactggatcgtgactccagcttttggca 440

               
Query: 241 gacg 244
           ||||
Sbjct: 441 gacg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)