Query= MSMg01no444_b01.b1 MSMg01no444_b01.b1 CHROMAT_FILE:
MSMg01no444_b01.b1 PHD_FILE: MSMg01no444_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:51 2005
(565 letters)
>mm_chr13_96470375_96471339
Length = 965
Score = 1085 bits (561), Expect = 0.0
Identities = 564/565 (99%)
Strand = Plus / Plus
Query: 1 tggacaggagccaccacaactataaaagcggagtgtcccgaggacagtatttcaactctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggacaggagccaccacaactataaaagcggagtgtcccgaggacagtatttcaactctc 260
Query: 61 cacgtgaataatgctaccataggatacctgagaagttccttaagtacccaagtgatacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacgtgaataatgctaccataggatacctgagaagttccttaagtacccaagtgatacct 320
Query: 121 gccatctacatcctgctgtttgtggttggtgtaccagccaacatcgtgaccctgtggaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccatctacatcctgctgtttgtggttggtgtaccagccaacatcgtgaccctgtggaaa 380
Query: 181 ctctccttaaggaccaaatccatcagtctggtcatctttcacaccaacctggccatcgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctccttaaggaccaaatccatcagtctggtcatctttcacaccaacctggccatcgca 440
Query: 241 gatctccttttttgtgtcacactgccatttaagatcgcctaccatctcaatggcaacaac 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatctccttttctgtgtcacactgccatttaagatcgcctaccatctcaatggcaacaac 500
Query: 301 tgggtatttggcgaggtcacgtgccggatcaccacggttgttttctacggcaacatgtac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggtatttggcgaggtcacgtgccggatcaccacggttgttttctacggcaacatgtac 560
Query: 361 tgcgctatcctgatcctcacctgcatgggcatcaaccgctacctggccacggctcaccct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcgctatcctgatcctcacctgcatgggcatcaaccgctacctggccacggctcaccct 620
Query: 421 ttcacataccagaagctgcccaaacgcagcttctccatgctcatgtgtggcatggtgtgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcacataccagaagctgcccaaacgcagcttctccatgctcatgtgtggcatggtgtgg 680
Query: 481 gtcatggttttcttatacatgctgccctttgtcatcctgaagcaggagtaccacctcgtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcatggttttcttatacatgctgccctttgtcatcctgaagcaggagtaccacctcgtc 740
Query: 541 cactccgagatcaccacctgccacg 565
|||||||||||||||||||||||||
Sbjct: 741 cactccgagatcaccacctgccacg 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_b01.g1 MSMg01no444_b01.g1 CHROMAT_FILE:
MSMg01no444_b01.g1 PHD_FILE: MSMg01no444_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:51 2005
(237 letters)
>mm_chr13_96655798_96656434
Length = 637
Score = 395 bits (204), Expect = e-114
Identities = 229/242 (94%), Gaps = 10/242 (4%)
Strand = Plus / Minus
Query: 1 tgagaggtgtgtgttaatcgtagagcttctggcctgattcgtgcatggttcctggctcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgagaggtgtgtgttaatcgtagagcttctggcctgattcgtgcatggttcctggctcac 378
Query: 61 agggtaaaggtaaattgtagttatttcaatgaattgagcatctacatcctatgtacaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agggtaaaggtaaattgtagttatttcaatgaattgagcatctacatcctatgtacaaaa 318
Query: 121 cattgt----gtttttaaggaaacacagctagttacaacttagaaggagaactggggact 176
|||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cattgtgggcg-----aaggaaacacagctagttacaacttagaaggagaactggggact 263
Query: 177 gagggtgtctgtcctcatttggt-gtttggctgctgtgcatgggtgatgatgccttggat 235
||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||
Sbjct: 262 gagggtgtctgtcctcagttggtaggatggctgctgtgcatgggtgatgatgccttggat 203
Query: 236 tg 237
||
Sbjct: 202 tg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space: 143184
Effective search space used: 143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
