BAC Information

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BAC

Clone NameMSMg01-445D09
Chromosome13 (Build37)
Map Location 28,136,172 - 28,136,730
singlet/doubletsinglet
Overlap genenone
Upstream genePrl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1
Downstream genePrl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445D09.T7 (MSMg01no445_d09.b1)MSMg01-445D09.TJ (MSMg01no445_d09.g1)
ACCAG534195AG534196
length731732
length of high quality
(start - end)
228 (76 - 303)559 (68 - 626)
definitionCHROMAT_FILE: MSMg01no445_d09.b1 PHD_FILE: MSMg01no445_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:20 2005CHROMAT_FILE: MSMg01no445_d09.g1 PHD_FILE: MSMg01no445_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCCGCTAAACGATCACTATTTCTTAGCGTGCGCGGAANNNCCTGG
TTTCTACACAACAGGAANTGAAANGTTGGCTGGGTATAGTAGCCTGGGCT
GGATTTTTCGTTCTCTTAGTGTTTGTATAACATCTGTCCAGGCTCTTCTG
GCTTTCATAGTCTCTGGTGAAAAGTCTGGTGTAATTCTGATAGGCCTGCC
TTTATATTTTACTTGACCTTTTTCCCTTACTGCTTTTATTAATGTCTCTT
TATTTAGTGCATTTGTTGTTCTGATTATTATGTGTAGGGAGGAATTTCTT
TTCNGTTCCTGTTNANTATGAGNTCTGTAGGTTTCTTGTATGTTCAATGT
CATCTCTCTCTTTAGGTTTGGGAAGTTTTCTTCTATTATTTTGTTGAAGA
TATTTGCTGGCCCTTTAAGTTGAAAATCTTGATTCTCATCTACTCCTATT
ATCTGTAGGTTTGGTCTTTTCCTTGTGTCCTGTATTTCCTGGATGTTTTG
AGTTAGGATCTTTTTGCATTTTGTATTATCTTTGATTGTTGCGCCGATGT
TCTCTATGGAATCATCTGCACCCGAGATTCTATCCTCCATCTCTTGCATT
TTGTTGCTGATGCTCACAACTATGTTTTTTTTTTTTTTTCCTAGGCATTC
TAATCCCAGCGCTGCCTCTCTTTGGCATCTCTTTATTGAGAGCTACTTCC
GCTTTTTATGCCCTGCATGCCTTTTATGCTT
AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGAAGGTCTCTCTTATCTTGTACCAAAGACAAA
TTGTTGCTCTGTAAAAGAAATGGAAGCAACCTCAGGGAACAATAAACCTT
ATGACTGCAGACGTGATTCTTTCTGCACAGACAAACTCTGTGAGGGTCAT
GGGTCTGTGCGTTGGTACTGAGAAGCTCATGTCAACAGTGCTGAGAGTCT
GCCTTCATAAACCGTTAGGAACAGGATGATGAATAATCACTTAACCTCTG
TAAGCTAGCTCAGCGACATGGTTTTATGAAAATTATGAAGCCCCAGTTCA
CTCAGTGGGTTACTGTAAGAAAATAATATAAATCTTTTAGCAAAGGGAAA
AATCCATGGGGTTACTATGGCAAGCTGGCAACTCCAGGCTGAGCACCGTC
TGAGCACCGTGTTAAAGACAGGACCCTCTTCATCTTCAATGTGAGGAATC
AAGCAAGCATGTGTTGATTCTCATCAAGCAAAATGATGAAGCCACACATG
AATTCTGTTGGCCTTGTCACATAACTGTGTAACATATTAATATTGGACAT
TGATTAAAAAAACTAGTAAGTCTGATGAATAACAATTATCACAAAATATA
AGACATTGAATTATCTGAATAGTGACTTTCACACCCACACTCAGAATTAA
TGTCATTTTCAAAAGTTTCGTGAATAATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_d09.g1 MSMg01no445_d09.g1 CHROMAT_FILE:
MSMg01no445_d09.g1 PHD_FILE: MSMg01no445_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:20 2005
         (559 letters)



>mm_chr13_28135972_28136930
          Length = 959

 Score = 1027 bits (531), Expect = 0.0
 Identities = 552/559 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaaggtctctcttatcttgtaccaaagacaaattgttgctctgtaaaagaaatggaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaaggtctctcttatcttgtaccaaagacaaattgttgctctgtaaaagaaatggaagc 260

                                                                       
Query: 61  aacctcagggaacaataaaccttatgactgcagacgtgattctttctgcacagacaaact 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 aacctcagggaacaataaaccttatgactgcagacttgattctttctgcacagacaaact 320

                                                                       
Query: 121 ctgtgagggtcatgggtctgtgcgttggtactgagaagctcatgtcaacagtgctgagag 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 321 ctgtgagggtcatgggtctgtgcgttggtactgagaaactcatgtcaacagtgctgaaag 380

                                                                       
Query: 181 tctgccttcataaaccgttaggaacaggatgatgaataatcacttaacctctgtaagcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgccttcataaaccgttaggaacaggatgatgaataatcacttaacctctgtaagcta 440

                                                                       
Query: 241 gctcagcgacatggttttatgaaaattatgaagccccagttcactcagtgggttactgta 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctcagtgacatggttttatgaaaattatgaagccccagttcactcagtgggttactgta 500

                                                                       
Query: 301 agaaaataatataaatcttttagcaaagggaaaaatccatggggttactatggcaagctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaaataatataaatcttttagcaaagggaaaaatccatggggttactatggcaagctg 560

                                                                       
Query: 361 gcaactccaggctgagcaccgtctgagcaccgtgttaaagacaggaccctcttcatcttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaactccaggctgagcaccgtctgagcaccgtgttaaagacaggaccctcttcatcttc 620

                                                                       
Query: 421 aatgtgaggaatcaagcaagcatgtgttgattctcatcaagcaaaatgatgaagccacac 480
           | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 agtgtgaggaatcaagcaagcatgtgttgattctcatcaagcaaaatgatgaagtcacac 680

                                                                       
Query: 481 atgaattctgttggccttgtcacataactgtgtaacatattaatattggacattgattaa 540
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgaactctgttggccttgtcacataactgtgtaacatattaatattggacattgattaa 740

                              
Query: 541 aaaaactagtaagtctgat 559
           |||||||||||||||||||
Sbjct: 741 aaaaactagtaagtctgat 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)